graph-genome/Schematize

Issues

• Misleading highlighted Links in self-loops of the same color when they don't actually link together

  #103 opened 4 years ago by josiahseaman
  0

• jbrowse-web Error: [MobX] There are multiple, different versions of MobX active

  #102 opened 4 years ago by XuewenWangUGA
  1

• Direct GFF reading: 1001G scalability

  #101 opened 4 years ago by josiahseaman
  5

• Color cells by copy number and inversion

  #37 opened 4 years ago by josiahseaman
  6

• Change endBin behavior to be automatic

  #22 opened 4 years ago by josiahseaman
  1

• Displaying colored gene annotations in the top rows

  #99 opened 4 years ago by josiahseaman
  6

• Lingering Issues for First Public Release

  #86 opened 4 years ago by josiahseaman
  16

• Integrate metadata (like provenance)

  #67 opened 4 years ago by joehagmann
  3

• Profiling Performance

  #92 opened 4 years ago by josiahseaman
  6

• Switching the pangenome position does not work correctly

  #91 opened 4 years ago by subwaystation
  3

• Ambiguity Code Handling

  #44 opened 5 years ago by josiahseaman
  4

• Render only unique rows

  #94 opened 4 years ago by josiahseaman
  0

• Pixel canvas for matrix scalability

  #89 opened 4 years ago by josiahseaman
  1

• v15: Sparse JSON input

  #87 opened 4 years ago by josiahseaman
  0

• Small viz issues with test data

  #80 opened 4 years ago by subwaystation
  5

• Zooming: Switching between different bin widths

  #33 opened 4 years ago by subwaystation
  1

• Data loading based on pantograph RDF via SPARQL

  #53 opened 4 years ago by 6br
  2

• Consider using gzip compressed json input

  #68 opened 4 years ago by dimatr
  3

• SPARQL loader of data

  #81 opened 4 years ago by 6br
  1

• Schematize has troubles dealing with one file based visualizations

  #78 opened 4 years ago by subwaystation
  8

• Visual Bug: all components get crammed to the left

  #54 opened 4 years ago by subwaystation
  13

• Render nucleotides on the nearest zoom level.

  #17 opened 4 years ago by subwaystation
  3

• Remove connectors at chunk boundaries within same component

  #65 opened 4 years ago by joehagmann
  1

• Synchronize JSON schema with odgi and component segmentation

  #69 opened 4 years ago by subwaystation
  2

• Sequence Download: Retrieve all viewed sequences in viewport

  #36 opened 5 years ago by josiahseaman
  2

• Remove "NaN is a not valid value"

  #64 opened 4 years ago by 6br
  3

• Toggle to hide SNPs in the Matrix

  #35 opened 5 years ago by josiahseaman
  1

• Dropdown menu for Data source list

  #43 opened 5 years ago by josiahseaman
  4

• Pathname List

  #41 opened 4 years ago by 6br
  2

• Highlight path on mouse-over/right click

  #50 opened 4 years ago by joehagmann
  1

• Add linting to project

  #48 opened 4 years ago by BonfaceKilz
  2

• Phylogenetic Tree Visualization

  #58 opened 4 years ago by josiahseaman
  5

• HaploBlocker for Sars/CoVid

  #57 opened 4 years ago by tpook92
  0

• Add test cases

  #56 opened 4 years ago by BonfaceKilz
  1

• Need for smarter chunk filename finding: CORS or SyntaxError: JSON.parse or FileNotFound

  #38 opened 4 years ago by subwaystation
  10

• Link click does not respond

  #45 opened 4 years ago by Mark-Seaman
  1

• Visually Freeze the Links for Vertical Scrolling

  #15 opened 5 years ago by joehagmann
  4

• Variant and variant frequency view

  #51 opened 4 years ago by joehagmann
  0

• TypeError: can't access property "map"

  #47 opened 4 years ago by 6br
  3

• Improve CSS

  #40 opened 5 years ago by BonfaceKilz
  1

• Some links at the top of the view are cut off

  #26 opened 5 years ago by subwaystation
  2

• Jump to pangenome position.

  #29 opened 5 years ago by subwaystation
  12

• Provide Documentation

  #34 opened 5 years ago by subwaystation
  3

• TypeError: Cannot read property 'files' of undefined

  #31 opened 5 years ago by joehagmann
  1

• Follow path mode

  #18 opened 5 years ago by subwaystation
  0

• Sometimes the left offsets of the whole components is wrong

  #27 opened 5 years ago by subwaystation
  1

• Metadata pane

  #19 opened 5 years ago by subwaystation
  0

• Undefinded button text in code and visualization

  #25 opened 5 years ago by subwaystation
  0

• Bug: nothing displays when there are no Links on screen

  #23 opened 5 years ago by josiahseaman
  1

• [PAP] Deleting the whole file name in the text input leads to a crash of the application

  #21 opened 5 years ago by subwaystation
  2