Pinned Repositories
DesktopSkittle
The older version of DNASkittle designed with QT in C++ for Desktop computers.
DNASkittleUtils
Fasta file handling utility functions that have been useful to me along the way.
ExaltedGMTool
Combat and status tracker for Exalted 2nd Edition RPG
FluentDNA
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
LightbringerExalted
Character creator for the collaborative storytelling game Exalted.
qmul-genome-convergence-pipeline
API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
skittle
DNASkittle is a web based genome browser that provides an interactive visualization of the raw sequence. Every nucleotide of 10Kbp can fit on one screen at a time. It makes heavy use of signal processing techniques to extract tandem repeats, and other genome elements.
veles
Visual reverse engineering tool.
josiahseaman's Repositories
josiahseaman/FluentDNA
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
josiahseaman/skittle
DNASkittle is a web based genome browser that provides an interactive visualization of the raw sequence. Every nucleotide of 10Kbp can fit on one screen at a time. It makes heavy use of signal processing techniques to extract tandem repeats, and other genome elements.
josiahseaman/LightbringerExalted
Character creator for the collaborative storytelling game Exalted.
josiahseaman/ExaltedGMTool
Combat and status tracker for Exalted 2nd Edition RPG
josiahseaman/veles
Visual reverse engineering tool.
josiahseaman/DesktopSkittle
The older version of DNASkittle designed with QT in C++ for Desktop computers.
josiahseaman/DNASkittleUtils
Fasta file handling utility functions that have been useful to me along the way.
josiahseaman/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
josiahseaman/qmul-genome-convergence-pipeline
API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
josiahseaman/assemblyStatics
A simple program for evaluate the assembly of a give genome.
josiahseaman/CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
josiahseaman/django-extras
Extensions for Django to solve common development situations not (or not yet) covered by the core Django framework.
josiahseaman/DNA_Duplications
josiahseaman/fcgm-migrate
Fate Core Game Manager Meteor.js Application
josiahseaman/frontend-nanodegree-arcade-game
josiahseaman/frontend-nanodegree-resume
josiahseaman/intro-project-html5-hello-world
josiahseaman/metagame
Compute metagame bounds from matchup charts.
josiahseaman/MinION-Hackathon
Getting a Taxonomy Treemap streaming from a MinION device
josiahseaman/Notebook-Experimentation
Experimenting with IPython Notebook
josiahseaman/odgi
optimized dynamic genome graph implementation
josiahseaman/paperprograms
Run Javascript on pieces of paper!
josiahseaman/parenthetical
Markup allows Text Documents to be read at varying levels of detail
josiahseaman/Portfolio
Responsive HTML Portfolio project featuring Udacity work.
josiahseaman/SPIMAPWGD
josiahseaman/udacity_framework
Testing area for HTML5 and CSS