Fasta file handling utility functions that have been useful to me along the way. Python 2-3 compatible. No heavy dependencies.
- Read FASTA contigs into python objects
- Various sorting and filtering for contigs
- Assembly stats N50, N75, L50, GC%
- Run command line programs
- Script tools together
Use pip to install the latest version from this repo:
pip install git+https://github.com/josiahseaman/DNASkittleUtils.git --upgrade