gregorysprenger

gregorysprenger's Stars

• pypy/pypy

  PyPy is a very fast and compliant implementation of the Python language.

  Language:Python98257

• jiffyclub/snakeviz

  An in-browser Python profile viewer

  Language:Python2.3k137

• senaite/senaite.core

  Enterprise Open Source Laboratory System (LIMS)

  Language:JavaScript251144

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript847108

• ialbert/genescape-central

  Gene Ontology subgraph visualizations

  Language:Python17

• lifebit-ai/GATK

  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

  Language:Nextflow1214

• eradman/entr

  Run arbitrary commands when files change

  Language:C4.5k105

• nf-cmgg/germline

  A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

  Language:Nextflow71

• nf-cmgg/exomecnv

  A nextflow pipeline for calling exome CNVs

  Language:Nextflow82

• godotgildor/fastq_compression_comparison

  Creating a simple Docker image to help perform comparisons for FASTQ compression

  Language:Python273

• MariaNattestad/Assemblytics

  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

  Language:JavaScript13528

• manuelernestog/weektodo

  WeekToDo is a Free and Open Source Minimalist Weekly Planner and To Do list App focused on privacy. Available for Windows, Mac, Linux or online.

  Language:Vue1.5k169

• holoviz/panel

  Panel: The powerful data exploration & web app framework for Python

  Language:Python4.7k513

• awslabs/linter-rules-for-nextflow

  Linter rules for Nextflow DSL scripts

  Language:Groovy281

• AlexandrovLab/SigProfilerExtractor

  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

  Language:Python15351

• ScottBot10/calibre_annas_archive

  Calibre store plugin for Anna's Archive

  Language:Python792

• staniel359/muffon

  Advanced multi-source music streaming + discovery client for desktop. Free, clean, no login, no ads.

  Language:Vue1.3k55

• Xosrov/ChatGPT-prompts

  Some useful ChatGPT prompts I use

  191

• erpalma/throttled

  Workaround for Intel throttling issues in Linux.

  Language:Python2.7k164

• abhisheknaiidu/awesome-github-profile-readme

  😎 A curated list of awesome GitHub Profile which updates in real time

  24.4k3.7k

• magic-wormhole/magic-wormhole

  get things from one computer to another, safely

  Language:Python20.2k637

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python32977

• wdecoster/chopper

  Language:Rust14512

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.2k347

• Layer8Err/WSL2setup

  Install WSL2 and handle dependencies

  Language:PowerShell6030

• kaisalmen/wsltooling

  Automated creation of WSL 2 Development Machine

  Language:Shell9429

• paperless-ngx/paperless-ngx

  A community-supported supercharged version of paperless: scan, index and archive all your physical documents

  Language:Python19.8k1.1k

• fastapi/fastapi

  FastAPI framework, high performance, easy to learn, fast to code, ready for production

  Language:Python76.6k6.5k

• bayandin/awesome-awesomeness

  A curated list of awesome awesomeness

  Language:Ruby31.7k3.5k

• Rx8Man/Rx8Man

  61