grenaud

grenaud's Stars

• rushter/MLAlgorithms

  Minimal and clean examples of machine learning algorithms implementations

  Language:Python10.7k424281.8k

• nothings/single_file_libs

  List of single-file C/C++ libraries.

  8.9k346126584

• neuml/paperai

  📄 🤖 Semantic search and workflows for medical/scientific papers

  Language:Python1.3k236999

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python517149069

• ekg/intervaltree

  a minimal C++ interval tree implementation

  Language:C++21818867

• popgenmethods/lecture_notes

  Lecture Notes on Computational and Mathematical Population Genetics

  18419015

• mfumagalli/ngsTools

  Programs to analyse NGS data for population genetics purposes

  Language:R161153464

• walaj/SeqLib

  C++ htslib/bwa-mem/fermi interface for interrogating sequence data

  Language:C++132194736

• lh3/fermi-lite

  Standalone C library for assembling Illumina short reads in small regions

  Language:C72111323

• jguhlin/sfasta

  sfasta

  Language:Rust32530

• grenaud/glactools

  command-line tools for the management of genotype likelihoods and allele counts

  Language:C++284292

• molpopgen/fwdpp

  fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations

  Language:C++27516711

• grenaud/gargammel

  gargammel is an ancient DNA simulator

  Language:C++2431514

• grenaud/schmutzi

  Maximum a posteriori estimate of contamination for ancient samples

  Language:C++203232

• TGatter/LazyB

  Economic Genome Assembly from Low Coverage Illumina and Nanopore Data

  Language:Python19140

• Schraiber/selection

  Language:C++14727

• grenaud/freeIbis

  An efficient basecaller for Illumina sequencers with calibrated quality scores

  Language:C++94

• melop/admixem

  Admixture simulator

  Language:C++6300

• steinrue/chimp

  CHMM History-Inference ML Procedure - Infers population size histories from genomic data

  Language:Python5100

• vforget/cgb

  Custom UCSC Genome Browser

  Language:Shell5200

• grenaud/aLib

  Language:Python3212

• BioNica/Segtor

  Segtor: Rapid Annotation of Genomic Coordinates and Single Nucleotide Variations Using Segment Trees.

  Language:Perl12