griffithlab/civicpy

synonymous CIViC variants with `=` in the name (e.g. `E55= (c.165G>A)`) cause VCF creation to fail

susannasiebert opened this issue · 0 comments

susannasiebert commented

File "/home/ubuntu/.local/lib/python3.7/site-packages/civicpy/exports.py", line 257, in writerecords assert '=' not in v

Suggested fix: replace the = with the wildtype amino acid e.g. E55= would be E55E.