Pinned Repositories
civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
civic-v2
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
DeepSVR
GenVisR
Genome data visualizations
pVAC-Seq
DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
pVACtools
regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
rnabio.org
website for the rnaseq course
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
VAtools
A set of tools to annotate VCF files with expression and readcount data
griffithlab's Repositories
griffithlab/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
griffithlab/GenVisR
Genome data visualizations
griffithlab/pVACtools
griffithlab/regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
griffithlab/rnabio.org
website for the rnaseq course
griffithlab/civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
griffithlab/pmbio.org
Website for the precision medicine workshop
griffithlab/civic-server
Backend Server for CIViC Project
griffithlab/VAtools
A set of tools to annotate VCF files with expression and readcount data
griffithlab/civic-v2
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
griffithlab/genviz.org
Genomic data interpretation and visualization Workshop
griffithlab/griffithlab.org
Griffith lab research website
griffithlab/civicpy
A python interface for the CIViC db application
griffithlab/civic-meeting
Repo for advertising and organizing CIViC unconference/meeting activities
griffithlab/anchor_huiming_etal_2023
Code for computational workflows and analyses relating to "Computational prediction of MHC anchor locations guide neoantigen identification and prioritization"
griffithlab/civic-docs
Source code for the civicdb.org docs
griffithlab/docm
Retired Project: Rails frontend to The Genome Institute's database of curated mutations (DoCM)
griffithlab/docker-pvactools
griffithlab/aml31
Resource website for the AML31 publication
griffithlab/DeepImmuno
Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
griffithlab/CIVIC_SVI_Course
A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines
griffithlab/neoag_vaccine_scripts
griffithlab/bigmhc
BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
griffithlab/DeepNeo
identification of immunogenic neoepitopes
griffithlab/docker-vatools
griffithlab/htlv_integration_sites
HTLV-1 integration site analysis notes and scripts
griffithlab/Immuno_Workflow_Course
griffithlab/itcr2022
Jekyll site for ITCR 2022 conference
griffithlab/pVACtools_Intro_Course
Getting started with pVACtools - pVACseq, pVACbind and pVACview
griffithlab/usp7_scripts
Analysis collaboration with Albert Kim lab - impact of USP7 knockout on splicing