Pinned Repositories
dgidb
Rails frontend to The Genome Institute's drug gene interaction database.
civic-v2
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
civicpy
A python interface for the CIViC db application
pVACtools
AGFusion
Python package to annotate and visualize gene fusions.
amber
analysis-wdls
Early stages of converting genome/analysis-workflows from CWL to WDL
analysis-workflows
Pilot test for using the Arvados system to create new MGI cancer pipelines.
mhcnuggets-2.3
Public facing repository for the MHCnuggets method: Class I and Class II Neoantigen Prediction
susannasiebert's Repositories
susannasiebert/mhcnuggets-2.3
Public facing repository for the MHCnuggets method: Class I and Class II Neoantigen Prediction
susannasiebert/AGFusion
Python package to annotate and visualize gene fusions.
susannasiebert/analysis-wdls
Early stages of converting genome/analysis-workflows from CWL to WDL
susannasiebert/analysis-workflows
Pilot test for using the Arvados system to create new MGI cancer pipelines.
susannasiebert/bfx-workshop
susannasiebert/BGA-interface-projects
Monorepo for user-interface projects of the Bioinformatics and Genome Analytics group at MGI
susannasiebert/cancervariants.org
Website for Variant Interpretation for Cancer Consortium:
susannasiebert/civic-client
Web client for CIViC: Clinical Interpretations of Variants in Cancer
susannasiebert/civic-server
Backend Server for CIViC Project
susannasiebert/CIVIC_SVI_Course
A hands on course explaining how to complete somatic cancer variant interpretation using CIViC and current guidelines
susannasiebert/dgi-db
Rails frontend to The Genome Institute's drug gene interaction database.
susannasiebert/docker-bam-readcount
Docker containerization for "bam-readcount"
susannasiebert/docker-bam_readcount_helper-cwl
susannasiebert/docker-cle
Docker containerization for the CLE
susannasiebert/docker-pvactools
susannasiebert/docker-strelka
A docker image for Strelka
susannasiebert/docker-strelka-cwl
A wrapper for the docker-strelka image for use in CWL-based workflows.
susannasiebert/docker-vatools
susannasiebert/docker-vep
Docker containerization for Ensembl Variant Effect Predictor
susannasiebert/docker-vep_helper-cwl
susannasiebert/docm
Rails frontend to The Genome Institute's database of curated mutations (DoCM)
susannasiebert/lunchinator
A Slack Integration for Lunch Groups
susannasiebert/mhcflurry
Peptide-MHC I binding affinity prediction
susannasiebert/mhcnuggets
Public facing repository for the MHCnuggets method
susannasiebert/pVAC-Seq
A cancer immunotherapy pipeline
susannasiebert/pVACtools
susannasiebert/pVACtools_Intro_Course
Getting started with pVACtools - pVACseq, pVACbind and pVACview
susannasiebert/readthedocs.org
The source code that powers readthedocs.org
susannasiebert/sphinxcontrib-programoutput
Sphinx extension for capturing program output
susannasiebert/therapy-normalization
Services and guidelines for normalizing drug and other therapy terms