Pinned Repositories
BluePyOpt
Blue Brain Python Optimisation Library
c302
The c302 framework has been moved here from https://github.com/openworm/CElegansNeuroML/tree/master/CElegans/pythonScripts/c302
ChannelWorm
A repository to integrate data, information, scripts, and models of ion channels in C. elegans
ChannelWormRawData
Curated data from Chopen
ion_channel_fitting
Parameter extraction for Hodgkin-Huxley type ion channel models using genetic algorithms
OpenWorm
Project Home repo for Central Dockerfile and Project-wide issues
repository-analysis
Analysis Tools for OpenWorm Repositories
sciunit
A Python framework for test-driven validation of scientific models.
tests
OpenWorm tests across various repos
WholeCell
Mycoplasma genitalium whole-cell model
gsarma's Repositories
gsarma/BluePyOpt
Blue Brain Python Optimisation Library
gsarma/c302
The c302 framework has been moved here from https://github.com/openworm/CElegansNeuroML/tree/master/CElegans/pythonScripts/c302
gsarma/ChannelWorm
A repository to integrate data, information, scripts, and models of ion channels in C. elegans
gsarma/ChannelWormRawData
Curated data from Chopen
gsarma/ion_channel_fitting
Parameter extraction for Hodgkin-Huxley type ion channel models using genetic algorithms
gsarma/OpenWorm
Project Home repo for Central Dockerfile and Project-wide issues
gsarma/repository-analysis
Analysis Tools for OpenWorm Repositories
gsarma/sciunit
A Python framework for test-driven validation of scientific models.
gsarma/tests
OpenWorm tests across various repos
gsarma/WholeCell
Mycoplasma genitalium whole-cell model
gsarma/chopen
An open source toolbox for ion channel data modeling and analysis
gsarma/fmie.github.io
Formal Methods for the Informal Engineer
gsarma/fmie2021.github.io
gsarma/hail
Scalable genomic data analysis.
gsarma/latex-book-template
A ready-to-edit LaTeX template for book-style compilations!
gsarma/movement_cloud
Movement Analysis on the cloud
gsarma/MTools
Object Oriented Programming in Mathematica 10+
gsarma/neuronunit
A package for data-driven validation of neuron and ion channel models using SciUnit
gsarma/open-worm-analysis-toolbox
A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
gsarma/org.geppetto
Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
gsarma/PyOpenWorm
Unified, simple data access python library for data & facts about C. elegans anatomy
gsarma/sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion