Pinned Repositories
MOFA2
Multi-Omics Factor Analysis
mofapy2
Multi-omics factor analysis v2
mofax
Work with trained factor models in Python
anndata
Annotated data.
chame
Chromatin analysis module
crispra_zga
Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation
mofaplus-shiny
Interactive MOFA+
single-cell-reading-list
A curated selection of blog posts on single-cell data analysis
muon
muon is a multimodal omics Python framework
muon-tutorials
Tutorials for multimodal omics data analysis
gtca's Repositories
gtca/crispra_zga
Code for CRISPR activation screen with single-cell RNA-seq readout studying zygotic genome activation
gtca/single-cell-reading-list
A curated selection of blog posts on single-cell data analysis
gtca/chame
Chromatin analysis module
gtca/mofaplus-shiny
Interactive MOFA+
gtca/anndata
Annotated data.
gtca/awesome-multi-omics
List of software packages for multi-omics analysis
gtca/bioconda-recipes
Conda recipes for the bioconda channel.
gtca/chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
gtca/dragonnfruit
A method for analyzing scATAC-seq experiments.
gtca/echinus
Get a gene expression table from transcript compatibility counts
gtca/General
The official registry of general Julia packages
gtca/git_btm2017
Example used for the git course given at the EMBL btm 2017
gtca/gtca
gtca/h5xx-datasets
Demo datasets managed with Git LFS
gtca/McQ
Multiplexed COVID-19 quantification
gtca/MOFA
Multi-Omics Factor Analysis
gtca/mofax-dash
Interactive MOFA+ powered by mofax and Dash
gtca/mudata-feedstock
A conda-smithy repository for mudata.
gtca/muon-dockerfile
Dockerfile for muon
gtca/recommonmark
A markdown parser for docutils
gtca/singularity_training
SIngularity training
gtca/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
gtca/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
gtca/versioned-hdf5
Versioned HDF5
gtca/y2ave_seqspecs
Work in progress seqspecs for Y2AVE processing for IGVF