gui11aume

I am a scientist who loves biology and mathematics. I have a research team at the University of Toronto.

University of Toronto ScarboroughToronto

Pinned Repositories

blueflower
Language:Python2 3 01
cacheperf
Measure cache performance
Language:C2 2 00
CodonTransformer2
Codon Transformer 2
Language:Python20
HMMt
R package for Hidden Markov Models with t emissions
Language:R7 4 38
mmp
MEM mapper prototype
Language:C13 4 111
oligoz
oligoz primer design
Language:Python3 3 00
pubcron
Cron watch of PubMed abstracts
Language:Python3 2 00
starcode
All pairs search and sequence clustering
Language:C96 7 4121
thegrandlocus
Language:Python3 4 00
vtrackR
Version tracking for R production scripts
Language:R3 5 20

gui11aume's Repositories

gui11aume/mmp
MEM mapper prototype
Language:C13 4 111
gui11aume/genome_structure_and_HIV_integration
Language:R2 5 01
gui11aume/asmap
Allele-specific mapping
Language:Python1 1 0
gui11aume/intentionality
What is this about?
Language:Python1 2 0
gui11aume/sesame
Compute MEM seeding probabilities
Language:C1 3 1
gui11aume/attention
AI Attention Models
Language:Python1 0
gui11aume/data
2 0
gui11aume/educational_pyro
Educational Pyro models
Language:Python3 0
gui11aume/educational_transformers
Educational Transformers (Attention based neural networks)
Language:Python2 0
gui11aume/faithful_mapping
Manuscript on faithful mapping
Language:TeX3 0
gui11aume/how2heap
A repository for learning various heap exploitation techniques.
Language:C1 0
gui11aume/lab_docker
Language:Dockerfile2 0
gui11aume/manuscript_seeding_errors
Symbolic method for computing MEM seeding probability
Language:TeX3 0
gui11aume/misc
Various stuff
Language:Python2 0
gui11aume/newear
A new ear for AB compartments
Language:Python2 0
gui11aume/NNXCR
Neural networks for X chromosome reactivation
Language:Python2 0
gui11aume/orbit
A read mapper with cycles
2 0
gui11aume/orfeu
qPCR - LIMS result syncrhonization (7900HT)
Language:Python1 0
gui11aume/pubmed
Extract abstracts from PubMed
Language:Python1 0
gui11aume/pyro_qPCR
Pyro inference for qPCR (coronavirus)
Language:Python2 0
gui11aume/R-figure-aesthetics
Default aesthetic parameters for my R figures
2 0
gui11aume/recipes
Stuff I often need to do
2 0
gui11aume/recommenders
Algorithms for recommender systems
Language:Python2 0
gui11aume/REPLAY_FF
Replicate analyses of DNA repair on FF reporter.
Language:Python2 0
gui11aume/SHIV
Scripts to analyze SHIV data
Language:Python2 0
gui11aume/stats
Language:TeX2 0
gui11aume/tikapdf
Dockerfile to run Tika on Ubuntu
Language:Java
gui11aume/transformers
🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.
Language:Python1 0
gui11aume/vcfline
VCF pipeline
Language:Perl2 0
gui11aume/YAMP
YAMP: Yet Another Metagenomic Pipeline
Language:Nextflow1 0