guokai8

Love coding Love cooking

University of Michigan

Pinned Repositories

bioAnno
Build Annotation package by using information from KEGG, NCBI, Ensembl
Language:R12 3 02
CandiHap
Build haplotye and generate figures
Language:R14 4 56
EnrichR
Functional Enrichment Analysis and Network Construction
Language:R9 2 12
eoffice
Export and import graphics and tables to MicroSoft office
Language:R21 4 07
microbial
Do microbiome analysis with dada2 and phyloseq object
Language:R11 2 83
rcellmarker
Identify cell type based on cell markers for single cell squencing
Language:R8 2 03
richR
Function Enrichment analysis and Network construction
Language:R6 2 44
scGSVA
scGSVA: Perform GSVA for single cell RNA seq
Language:R31 2 243
seq2Fun
seq2Fun provides function to annotate protein or coding sequences with KEGG pathways
Language:R7 2 12
VennDetail
VennDetail: a bioconductor package for VennDiagram visualization and details extraction
Language:R27 3 44

guokai8's Repositories

guokai8/scGSVA
scGSVA: Perform GSVA for single cell RNA seq
Language:R31 2 243
guokai8/eoffice
Export and import graphics and tables to MicroSoft office
Language:R21 4 07
guokai8/bioAnno
Build Annotation package by using information from KEGG, NCBI, Ensembl
Language:R12 3 02
guokai8/rcellmarker
Identify cell type based on cell markers for single cell squencing
Language:R8 2 03
guokai8/richR
Function Enrichment analysis and Network construction
Language:R6 2 44
guokai8/o2plsda
Omics data integration with o2plsda
Language:R4 3 21
guokai8/d2l-zh-
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。
Language:Python2 0 01
guokai8/rcolors
Functions with r colors
Language:R2 1 0
guokai8/scRNAseq-training
Language:R1 1 01
guokai8/annotated_deep_learning_paper_implementations
🧑‍🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
Language:Jupyter Notebook0 0
guokai8/Cd8_T_cell
Language:HTML1 0
guokai8/ChatGPT
🔮 ChatGPT Desktop Application (Mac, Windows and Linux)
Language:Rust0 0
guokai8/ComputationalGenomicswithR
Computational Genomics with R
guokai8/drug2cell
Gene group activity utility functions for Scanpy
Language:Jupyter Notebook0 0
guokai8/excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
Language:HTML0 0
guokai8/Intro-to-R-flipped
guokai8/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Language:Python0 0
guokai8/Ligand-Receptor-Pairs
Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
guokai8/Machine-Learning-Collection
A resource for learning about Machine learning & Deep Learning
Language:Python0 0
guokai8/pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
guokai8/R_for_Data_Science
Materials for teaching R and tidyverse
Language:TeX0 0
guokai8/sceasy
A package to help convert different single-cell data formats to each other
Language:R0 0
guokai8/scellplot
single cell and spatial transcriptomics plot
Language:R1 0
guokai8/scRNA-seq_online
Language:R0 0
guokai8/Spaghetti
Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing
Language:Python0 0
guokai8/TFAM
Mitochondrial Transcription Factor A Regulates FOXP3+ T Cell Mediated Maintenance of CD4+ T Cell Landscapes and Immunological Aging
Language:R1 0
guokai8/tidygroup
Do analysis with group information
1 0
guokai8/tidymass
tidymass
guokai8/visium_heart
Spatial transcriptomics of heart tissue
Language:Jupyter Notebook0 0
guokai8/workshop-scRNAseq
Single cell RNA sequencing analysis course