EnrichR
Functional Enrichment Analysis and Network Construction
https://www.github.com/guokai8/richR")
PS: EnrichR are not supported any more. Please use the richR("Description
EnrichR is a package can be used for functional enrichment analysis and network construction based on enrichment analysis results. It supported almost all species pubished by ENSEMBL and included with Bioconductor. Now the EnrichR provide function to direct download annotation dataset from the MsigDB.
Dependencies
R>2.15
Installation
library(devtools)
install_github("guokai8/EnrichR")
Getting started
library(EnrichR)
More detail please see vignette
vignette("EnrichR")
Some useful commands
If you want tranform ID from one type another type("SYMBOL"->"ENSEMBL")
idconvert(keys=vector_of_symbols,species="human",fkeytype= "SYMBOL",tkeytype="ENSEMBL")
If you want have more details include input data and enrichment results
getdetail(enrichres,input_data)
Contact information
I still working on this package and will add more functions here.
For any questions please contact guokai8@gmail.com