Pinned Repositories
allelecounter
Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.
bwa-hbm
Adaptation of the BWA MEM read mapper leveraging HBM on FPGAs to accelerate the SMEM algorithm
bwagpu
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
cerberus
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
CONCH
A vision-language foundation model for computational pathology - Nature Medicine
DB-GPT
Revolutionizing Database Interactions with Private LLM Technology
Edge-MoE
Edge-MoE: Memory-Efficient Multi-Task Vision Transformer Architecture with Task-level Sparsity via Mixture-of-Experts
EmbeddedAI-Scope
A 3D Printed Embedded AI-based Microscope for Pathology Diagnosis
Genome-on-Diet
Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
worm_sim
worm_sim developed by SLD group of Carnegie Mellon University
guopengwei's Repositories
guopengwei/worm_sim
worm_sim developed by SLD group of Carnegie Mellon University
guopengwei/track