gwlilabmit/rendseq

Issues

• Feature request: filtered wigs --> 3' and 5' peak position table

  #59 opened a year ago
  0

• Add raw reads/peak based shadow removal

  #58 opened 2 years ago
  0

• Current Z-score outlier removal method is resulting in increased number of false positives.

  #57 opened 2 years ago
  0

• Fix the z score tests

  #53 opened a year ago
  1

• Pipeline sometimes fails to call obvious peaks if one side has very few reads!

  #46 opened 2 years ago
  0

• Add notebooks to readthedocs

  #45 opened 2 years ago
  2

• Implement a web interface

  #42 opened 3 years ago
  4

• Remove Command Line Interface

  #41 opened 3 years ago
  2

• Identify and remove PCR jackpots

  #40 opened 3 years ago
  9

• Add functionality for relevant biological questions

  #39 opened 3 years ago
  0

• Create a github action to automate pypi release

  #38 opened 3 years ago
  0

• store data in objects rather than arrays?

  #37 opened 3 years ago
  1

• Lets Squash our merges?

  #34 opened 2 years ago
  5

• Figure out where to host documentation!

  #32 opened 3 years ago
  5

• Add more tests for hmm_peaks

  #28 opened 3 years ago
  0

• Trilom doesn't allow CI testing on windows

  #24 opened 3 years ago
  2

• Refactor file paths

  #22 opened 3 years ago
  0

• local pytest run seems to have issues?

  #20 opened 3 years ago
  2

• Should parsing functions go into file_funcs?

  #19 opened 3 years ago
  0

• Put in more checks for correct argument type

  #18 opened 3 years ago
  0

• Create a PR template.

  #17 opened 3 years ago
  0

• Add logging functionality

  #15 opened 3 years ago
  1

• p_to_p = 1 doesn't stay in peak state

  #13 opened 3 years ago
  3

• hmm_peaks can't detect very extreme peaks

  #12 opened 3 years ago
  2

• What is the Z-score of a point with invalid left and right Z-scores?

  #10 opened 3 years ago
  5

• Adapt to bedgraph or multi-chromosome wig

  #9 opened 3 years ago
  1

• Should file_funcs take a file handle instead?

  #8 opened 3 years ago
  2

• Vectorize functions

  #7 opened 3 years ago
  1

• Add codecov

  #6 opened 3 years ago
  5

• Add continuous integration

  #5 opened 3 years ago
  7

• Add more optional arguments to command line interface for make_peaks

  #4 opened 3 years ago
  0

• Create a tutorial!

  #3 opened 3 years ago
  1

• Add some basic test cases

  #2 opened 3 years ago
  3

• [Planning] - What type of generative model should we implement?

  #1 opened 3 years ago
  1