AUCell is an R-package to analyze the state of gene-sets in single-cell RNA-seq data (i.e. identify cells with active gene signatures).
Availability:
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The newest stable version of AUCell is available in Bioconductor. Unless it is for using with SCENIC, we recommend to install AUCell from Bioconductor. The package also contains a tutorial (vignette) with information on how to run AUCell and how to interprete its results.
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SCENIC (v 0.1.5) requires AUCell 0.99.5. More details on how to install this specific version are provided in SCENIC tutorial. (Using newer versions might result in errors related to missing functions/classes, as some of these have been renamed). An update of SCENIC compatible with the latest version of AUCell is coming soon.
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This Github repository is meant mostly for development. "Use at your own risk" :-). Developers are welcome to contribute.