gyd1990

Pinned Repositories

13_questions_of_shell
shell十三问--shell教程（markdown 版本）
00
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
Language:R00
anndata2ri
Convert between AnnData and SingleCellExperiment
Language:Python0 1 00
anndata_usage
Use cases for anndata.
Language:Jupyter Notebook00
ASAP
ASAP : Automated Single-cell Analysis Pipeline
Language:R00
AUCell
AUCell: score single cells with gene regulatory networks
Language:R00
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
00
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
0 1 00
BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
Language:R10
code-using-frequently
20

gyd1990's Repositories

gyd1990/anndata2ri
Convert between AnnData and SingleCellExperiment
Language:Python0 1 00
gyd1990/Awesome-Linux-Software
A list of awesome applications, software, tools and other materials for Linux distros.
Language:Python
gyd1990/bioinformatics_study
bioiformatics software study including R python ......
1 0
gyd1990/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
Language:Python
gyd1990/cmapR
R
Language:Jupyter Notebook
gyd1990/dynverse
dynverse is created to support the development, execution, and benchmarking of trajectory inference methods. 🌌
Language:R1 0
gyd1990/EmbryoTimecourse2018
Data and analysis scripts for our Embryo Timecourse paper.
Language:HTML1 0
gyd1990/FateID
R package for the inference of cell fate bias from single-cell RNA-seq data.
Language:R1 0
gyd1990/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics
Language:Shell
gyd1990/gganimate
A Grammar of Animated Graphics
Language:R
gyd1990/GTseq-Pipeline
A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.
gyd1990/HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Language:Python
gyd1990/NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
Language:Perl1 0
gyd1990/Noted-bugs-in-analysis-
Some Bugs need to be noted!!!!!
1 0
gyd1990/oneliners
Useful bash one-liners for bioinformatics.
1 0
gyd1990/patchwork
The Composer of ggplots
Language:R
gyd1990/PHATE
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional single cell data with natural progressions or trajectories.
Language:Python
gyd1990/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Language:Python
gyd1990/Python-100-Days
Python - 100天从新手到大师
Language:Jupyter Notebook
gyd1990/reticulate
R Interface to Python
Language:R
gyd1990/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Language:Python
gyd1990/rosalind
learning bioinformatics and programming through problem solving.
Language:Python
gyd1990/SAVER
Single-cell RNA-seq Gene Expression Recovery
Language:R
gyd1990/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Language:Python
gyd1990/scGPS
A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data
Language:R
gyd1990/scRNA-seq_notes
A list of scRNA-seq analysis tools
Language:R
gyd1990/scVI
A deep generative model for gene expression profiles from single-cell RNA sequencing
Language:Jupyter Notebook
gyd1990/SomeRecords
Some very useful records for me.
gyd1990/umap
Uniform Manifold Approximation and Projection
Language:Python
gyd1990/VISION
A high-throughput and unbiased module for interpreting scRNA-seq data.
Language:R