Pinned Repositories
13_questions_of_shell
shell十三问--shell教程（markdown 版本）
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
anndata2ri
Convert between AnnData and SingleCellExperiment
anndata_usage
Use cases for anndata.
ASAP
ASAP : Automated Single-cell Analysis Pipeline
AUCell
AUCell: score single cells with gene regulatory networks
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
code-using-frequently
gyd1990's Repositories
gyd1990/13_questions_of_shell
shell十三问--shell教程（markdown 版本）
gyd1990/dynamicTreeCut
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
gyd1990/embl-single-cell-course-2016
Material for lecture at the EMBL Single Cell Course 2016
gyd1990/goatools
Python scripts to find enrichment of GO terms
gyd1990/GPfates
gyd1990/GSEApy
Gene Set Enrichment Analysis in Python
gyd1990/Hemberg-scRNA-seq-Course
gyd1990/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
gyd1990/illumina-barcode-swapping
gyd1990/outrigger
Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
gyd1990/PhenoGraph
Subpopulation detection in high-dimensional single-cell data
gyd1990/pycon2014_dataviz
Computational data visualization. Presented at PyCon 2014 lightning talks.
gyd1990/PySCUBA
Python for Single-cell Clustering Using Bifurcation Analysis
gyd1990/RCA
Residual Component Analysis
gyd1990/RForBioinformatics
gyd1990/rnaseek
Scripts and modules for parsing and aggregating output files from RNA-sequencing data
gyd1990/rnaseqlib
RNA-Seq pipeline
gyd1990/robust-pca
A simple Python implementation of R-PCA
gyd1990/scAnalysisTutorial
gyd1990/scRNAseq_batchEffects
Batch effects in scRNA-seq and their impact on downstream analysis
gyd1990/single-cell-bioinformatics
Course material in notebook format for learning about single cell bioinformatics methods
gyd1990/single-cell-bioinformatics-scrm-2016
Single cell bioinformatics class at the Sanford Consortium for Regenerative Medicine (SCRM) in 2016
gyd1990/spectrum-of-differentiation-supplements
Mirror of analysis files for "Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells"
gyd1990/SRA2R
SRA2R, a package to import SRA data directly into R
gyd1990/Utilities
Useful perl code for NGS analysis. Primarily GFF3 manipulation and FASTA parsing.
gyd1990/workshop-scRNAseq-oxford-sep2016
scRNA-seq workshop in Oxford on 9 September 2016