gyd1990

gyd1990's Stars

• jackfrued/Python-100-Days

  Python - 100天从新手到大师

  Language:Python154k51.9k

• scverse/anndata-tutorials

  Use cases for anndata.

  Language:Jupyter Notebook1312

• gaschlabgit/RNA-Seq-Pipeline

  RNA-Seq Pipeline written in Python

  Language:Python57

• my-rna-health/rna-seq

  bioinformatics pipelines

  Language:wdl76

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k617

• hbctraining/In-depth-NGS-Data-Analysis-Course

  Language:HTML432268

• maxplanck-ie/rna-seq-qc

  Rna-seq pipeline, From FASTQ to differential expression analysis...

  Language:Python2011

• LenzLab/RNA-seq-scripts

  This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.

  Language:Perl67

• ENCODE-DCC/long-rna-seq-pipeline

  STAR based ENCODE Long RNA-Seq processing pipeline

  Language:Python9248

• olgabot/rna-seq-diff-exprn

  RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

  Language:R5436

• crazyhottommy/RNA-seq-analysis

  RNAseq analysis notes from Ming Tang

  Language:Python862293

• CandiceChuDVM/RNA-Seq

  New user

  Language:R4123

• GIS-SP-Group/RCA

  R package for robust clustering of single cell RNA sequencing data

  Language:R3824

• scRNA-tools/scRNA-tools

  Table of software for the analysis of single-cell RNA-seq data.

  Language:R30175

• rcannood/SCORPIUS

  Linear trajectory inference for single-cell RNA-seq

  Language:R5716

• LuyiTian/scPipe

  a pipeline for single cell RNA-seq data analysis

  Language:HTML6824

• jhsiao999/singleCell-method

  website

  Language:HTML61

• broadinstitute/scalable_analytics

  Public collaboration of Scalable Single Cell Analytics

  Language:Python125

• caleblareau/proatac

  Preprocessing pipeline for (sc)ATAC data

  Language:Python102

• MauroJM/single-cell-sequencing

  scripts and functions to analyse single-cell sequencing data

  Language:R33

• pachterlab/scRNA-Seq-TCC-prep

  Preprocessing of single-cell RNA-Seq (deprecated)

  Language:Jupyter Notebook6226

• xiangyue9607/single-cell-classification

  We use two kinds of neural networks: Multilayer Perceptron (MLP) and Recurrent Neural Network (RNN) to predict the single-cell cycle stage based on transcriptome data.

  Language:Python72

• hbc/bcbioSingleCell

  R package for bcbio single-cell RNA-seq analysis.

  Language:R298

• hms-dbmi/scw

  HSCI/Catalyst Single-cell RNA-Seq Workshop

  Language:HTML1911

• olgabot/cshl-singlecell-2017

  Single Cell Analysis course at Cold Spring Harbor Laboratory 2017

  Language:Jupyter Notebook2317

• rhondabacher/SCnorm

  Normalization for single cell RNA-seq data

  Language:R469

• petercollingridge/Cell-Simulation

  Python simulation of a single-celled organism

  Language:Python4718

• MarioniLab/Deconvolution2016

  Code and manuscript files for Aaron and Karsten's deconvolution paper.

  Language:TeX169

• govinda-kamath/clustering_on_transcript_compatibility_counts

  Clustering cells from single cell RNA seq assays

  Language:Jupyter Notebook4621

• broadinstitute/single_cell_analysis

  Documents used for workshops on single cell analysis

  Language:HTML2715