gyd1990's Stars
jackfrued/Python-100-Days
Python - 100天从新手到大师
scverse/anndata-tutorials
Use cases for anndata.
gaschlabgit/RNA-Seq-Pipeline
RNA-Seq Pipeline written in Python
my-rna-health/rna-seq
bioinformatics pipelines
griffithlab/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
hbctraining/In-depth-NGS-Data-Analysis-Course
maxplanck-ie/rna-seq-qc
Rna-seq pipeline, From FASTQ to differential expression analysis...
LenzLab/RNA-seq-scripts
This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.
ENCODE-DCC/long-rna-seq-pipeline
STAR based ENCODE Long RNA-Seq processing pipeline
olgabot/rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
crazyhottommy/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
CandiceChuDVM/RNA-Seq
New user
GIS-SP-Group/RCA
R package for robust clustering of single cell RNA sequencing data
scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
rcannood/SCORPIUS
Linear trajectory inference for single-cell RNA-seq
LuyiTian/scPipe
a pipeline for single cell RNA-seq data analysis
jhsiao999/singleCell-method
website
broadinstitute/scalable_analytics
Public collaboration of Scalable Single Cell Analytics
caleblareau/proatac
Preprocessing pipeline for (sc)ATAC data
MauroJM/single-cell-sequencing
scripts and functions to analyse single-cell sequencing data
pachterlab/scRNA-Seq-TCC-prep
Preprocessing of single-cell RNA-Seq (deprecated)
xiangyue9607/single-cell-classification
We use two kinds of neural networks: Multilayer Perceptron (MLP) and Recurrent Neural Network (RNN) to predict the single-cell cycle stage based on transcriptome data.
hbc/bcbioSingleCell
R package for bcbio single-cell RNA-seq analysis.
hms-dbmi/scw
HSCI/Catalyst Single-cell RNA-Seq Workshop
olgabot/cshl-singlecell-2017
Single Cell Analysis course at Cold Spring Harbor Laboratory 2017
rhondabacher/SCnorm
Normalization for single cell RNA-seq data
petercollingridge/Cell-Simulation
Python simulation of a single-celled organism
MarioniLab/Deconvolution2016
Code and manuscript files for Aaron and Karsten's deconvolution paper.
govinda-kamath/clustering_on_transcript_compatibility_counts
Clustering cells from single cell RNA seq assays
broadinstitute/single_cell_analysis
Documents used for workshops on single cell analysis