gyd1990

gyd1990's Stars

• jackfrued/Python-100-Days

  Python - 100天从新手到大师

  Language:Python158k6.1k65152.5k

• griffithlab/rnaseq_tutorial

  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

  Language:R1.3k18241620

• crazyhottommy/RNA-seq-analysis

  RNAseq analysis notes from Ming Tang

  Language:Python944787300

• hbctraining/In-depth-NGS-Data-Analysis-Course

  Language:HTML438455269

• scRNA-tools/scRNA-tools

  Table of software for the analysis of single-cell RNA-seq data.

  Language:R310212477

• ENCODE-DCC/long-rna-seq-pipeline

  STAR based ENCODE Long RNA-Seq processing pipeline

  Language:Python9346849

• LuyiTian/scPipe

  a pipeline for single cell RNA-seq data analysis

  Language:HTML6967324

• pachterlab/scRNA-Seq-TCC-prep

  Preprocessing of single-cell RNA-Seq (deprecated)

  Language:Jupyter Notebook629626

• rcannood/SCORPIUS

  Linear trajectory inference for single-cell RNA-seq

  Language:R5853616

• olgabot/rna-seq-diff-exprn

  RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

  Language:R54121135

• petercollingridge/Cell-Simulation

  Python simulation of a single-celled organism

  Language:Python507018

• rhondabacher/SCnorm

  Normalization for single cell RNA-seq data

  Language:R473359

• govinda-kamath/clustering_on_transcript_compatibility_counts

  Clustering cells from single cell RNA seq assays

  Language:Jupyter Notebook467021

• CandiceChuDVM/RNA-Seq

  New user

  Language:R429123

• GIS-SP-Group/RCA

  R package for robust clustering of single cell RNA sequencing data

  Language:R3891024

• hbc/bcbioSingleCell

  R package for bcbio single-cell RNA-seq analysis.

  Language:R294128

• broadinstitute/single_cell_analysis

  Documents used for workshops on single cell analysis

  Language:HTML2712115

• olgabot/cshl-singlecell-2017

  Single Cell Analysis course at Cold Spring Harbor Laboratory 2017

  Language:Jupyter Notebook236018

• maxplanck-ie/rna-seq-qc

  Rna-seq pipeline, From FASTQ to differential expression analysis...

  Language:Python2016111

• hms-dbmi/scw

  HSCI/Catalyst Single-cell RNA-Seq Workshop

  Language:HTML199111

• MarioniLab/Deconvolution2016

  Code and manuscript files for Aaron and Karsten's deconvolution paper.

  Language:TeX16829

• scverse/anndata-tutorials

  Use cases for anndata.

  Language:Jupyter Notebook136313

• broadinstitute/scalable_analytics

  Public collaboration of Scalable Single Cell Analytics

  Language:Python121115

• caleblareau/proatac

  Preprocessing pipeline for (sc)ATAC data

  Language:Python107112

• my-rna-health/rna-seq

  bioinformatics pipelines

  Language:WDL7406

• xiangyue9607/single-cell-classification

  We use two kinds of neural networks: Multilayer Perceptron (MLP) and Recurrent Neural Network (RNN) to predict the single-cell cycle stage based on transcriptome data.

  Language:Python7302

• jhsiao999/singleCell-method

  website

  Language:HTML64171

• LenzLab/RNA-seq-scripts

  This is a collection of small scripts built by the Lenz lab to make RNA sequencing tasks more efficient.

  Language:Perl67

• gaschlabgit/RNA-Seq-Pipeline

  RNA-Seq Pipeline written in Python

  Language:Python57

• MauroJM/single-cell-sequencing

  scripts and functions to analyse single-cell sequencing data

  Language:R3203