Pinned Repositories
13_questions_of_shell
shell十三问--shell教程(markdown 版本)
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
anndata2ri
Convert between AnnData and SingleCellExperiment
anndata_usage
Use cases for anndata.
ASAP
ASAP : Automated Single-cell Analysis Pipeline
AUCell
AUCell: score single cells with gene regulatory networks
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
code-using-frequently
gyd1990's Repositories
gyd1990/code-using-frequently
gyd1990/BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
gyd1990/anndata_usage
Use cases for anndata.
gyd1990/ASAP
ASAP : Automated Single-cell Analysis Pipeline
gyd1990/awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
gyd1990/BioC2018
BioC 2018: Where Software and Biology Connect
gyd1990/CerebellumDev
单细胞图谱代码 A Single-Cell Transcriptional Atlas of the Developing Murine CerebellumCode for processing data
gyd1990/cgmaptools
toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
gyd1990/cshl-singlecell-2017
Single Cell Analysis course at Cold Spring Harbor Laboratory 2017
gyd1990/deepcpg
Deep neural networks for predicting CpG methylation
gyd1990/depict
DEPICT code, instructions and an example
gyd1990/DNA-methylation-analysis
DNA methylation analysis notes from Ming Tang
gyd1990/DoubletDetection
Doublet detection in single-cell RNA-seq data.
gyd1990/enrichment_analysis_celltype
Cell type enrichment analysis using gene signatures and cluster markers
gyd1990/glmnet
R package glmnet for estimating lasso and elastic net
gyd1990/HiClink
HiClink: a scalable, flexible, robust framework for HiC data
gyd1990/LOLA
Locus Overlap Analysis: Enrichment of Genomic Ranges
gyd1990/MAGMA_Celltyping
Identify cell types underlying the associations found in GWAS summary statistics
gyd1990/mouse_scRNAseq
List of mouse scRNA-Seq studies
gyd1990/msigdb
MSigDB gene sets
gyd1990/networkD3
D3 JavaScript Network Graphs from R
gyd1990/pairwise-discreteness-testing
gyd1990/qtcat
Quantitative Trait Cluster Association Test in R
gyd1990/rsnps
Wrapper to a number of SNP web APIs
gyd1990/SCODE
SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
gyd1990/scRNASeqPipeline
gyd1990/shinyCircos
an R/shiny application for creation of Circos plot interactively
gyd1990/STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
gyd1990/TDAmapper
(R package) Analyze High-Dimensional Data Using Discrete Morse Theory
gyd1990/velocyto-notebooks