Pinned Repositories
13_questions_of_shell
shell十三问--shell教程（markdown 版本）
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
anndata2ri
Convert between AnnData and SingleCellExperiment
anndata_usage
Use cases for anndata.
ASAP
ASAP : Automated Single-cell Analysis Pipeline
AUCell
AUCell: score single cells with gene regulatory networks
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
code-using-frequently
gyd1990's Repositories
gyd1990/advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
gyd1990/AUCell
AUCell: score single cells with gene regulatory networks
gyd1990/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
gyd1990/awesome-deep-learning
A curated list of awesome Deep Learning tutorials, projects and communities.
gyd1990/awesome-shell
A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.
gyd1990/bracer
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
gyd1990/coronary-progenitor-scRNAseq
gyd1990/cs-video-courses
List of Computer Science courses with video lectures.
gyd1990/DiagrammeR
Graph and network visualization using tabular data in R
gyd1990/EWCE
Expression Weighted Celltype Enrichment
gyd1990/GenVisR
Genome data visualizations
gyd1990/GSVA
Gene set variation analysis for microarray and RNA-seq data
gyd1990/GWAS-scRNAseq-Integration
Finding enrichment in MCA cell types for published rare and common variants associated with disease traits from GWAS Catalog
gyd1990/HGNChelper
Identify and correct invalid gene symbols
gyd1990/merlot
Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
gyd1990/MetaMap
MetaMap - This repository describes the code and analyses accompanying the "MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data" manuscript.
gyd1990/paga
Mapping topologies of complex manifolds.
gyd1990/RCA-1
R package for robust clustering of single cell RNA sequencing data
gyd1990/sc_batch_remove
Wrapper of batch removal method for scRNA-seq
gyd1990/SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
gyd1990/scRNA-seq_10X
10X 单细胞册数数据分析手册
gyd1990/seurat
R toolkit for single cell genomics
gyd1990/seuratWGCNA
Weighted gene co-expression network analysis for scRNA-seq data in Seurat
gyd1990/singlecellworkflow
Tutorial for the analysis of scRNA-seq data in R
gyd1990/SRAdbV2
R Interface to the NCBI SRA metadata
gyd1990/thymusatlastools
R package to accompany our recent Immunity paper on the mouse thymus developmental cell atlas.
gyd1990/tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
gyd1990/URD
URD - Reconstruction of Branching Developmental Trajectories
gyd1990/velocyto.py
RNA velocity estimation in Python
gyd1990/velocyto.R
RNA velocity estimation in R