Adding BCFtools to docker file
ambenj opened this issue · 1 comments
ambenj commented
Hello! I'm currently using the docker file to run gangSTR and then mergeSTR which requires sorted, zipped, and indexed VCFs. From what I can tell, the docker image doesn't include bcftools, which is needed for sorting the VCF output from gangSTR. Can bcftools be added to the docker file? Or if there is a way to sort VCF files with the current build can you let me know how to do it? Thank you!
nmmsv commented
Hi Alyssa,
Sorry for my delayed response. We have only included the packages that were required for running TRTools. However, we can also add bcftools to the docker file as it's a useful utility. Would you be able to make the change and submit a PR? I'll be happy to help and review.
Thanks.