compareSTR length genotype assumption
hopedisastro opened this issue · 0 comments
hopedisastro commented
Hi,
I'm trying to compare STR calls from GangSTR and ExpansionHunter using compareSTR. compareSTR was able to run and provide output files but I received the warning below. Why does this warning occur and how can I explicitly request length based genotypes?
tr_harmonizer.py:928: UserWarning: String genotypes have been requested for a TRRecord generated by a caller which only generates length genotypes, not string genotypes. Returning a fabricated string genotype. Consider requesting length based genotypes instead.
warnings.warn("String genotypes have been requested for a"