Invalid syntax

[bibb]

Hello,

I'm trying to run plinkSTR in my ubuntu system and I keep getting this problem:

File "/usr/local/lib/python3.6/dist-packages/strtools-1.0.0-py3.6.egg/plinkSTR/plinkSTR.py", line 48
print record.start, int(start), record.ID
^
SyntaxError: invalid syntax

I run dumpSTR and the other tools from STRtools perfectly fine.

Thanks

Bernabe

ps: Could you please provide an example dataset to see if the problem is with my data? I would appreciate that!.

[psychrb]

bibb, I am having the same issue: Was this resolved? Thanks,

[nmmsv]

Hello,
Apologies for late response.
There are some test files in this directory. Can you please try running them to see if the problem resolves or not?
https://github.com/gymreklab/mendelian-repeats-pipeline/tree/master/examples/data

[psychrb]

I resolved this by adding parentheses around the print function in plinkSTR.py, line 48

[nmmsv]

We've made some changes, and they should fix this issue (we had a python 3 compatibility problem).
Please let me know if you face any other issues.