Tutorials and tools for running jobs on AWS batch
- Getting started with AWS Batch (getting_started_batch.md)
- Running a GangSTR job on Batch (gangstr_command_line_example.md)
Use these paths for common resources like reference genomes.
-
Reference genomes on S3 maintained by Broad: broad-references-readme.html.
- s3://broad-references/hg19/v0/Homo_sapiens_assembly19.fasta (hg19/GRch37/hs37, no chr)
- s3://broad-references/hg38/v0/Homo_sapiens_assembly38.fasta (hg38, chr)
-
Other reference genomes:
- s3://gymreklab/resources/genomes/hg19/hg19.fa (hg19, with chr)