Pinned Repositories
chips
Simulation tool for ChIP- and other -seq experiments
cse185-spring18
Course website for CSE Spring 2018
cse185-spring19
Course website for CSE 185 Spring 2019
dbstr
dbstr
GangSTR
A tool for profiling long STRs from short reads
gtex-estrs-paper
Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort
mutea-autosomal
Mutation rate analysis of autosomal loci
snpstr-imputation
Scripts for analyses and figures for SNP STR Imputation manuscript
ssc-denovos-paper
Scripts and notebooks for generating results in Mitra et al. 2020
STRDenovoTools
Toolkit for calling and analyzing de novo STR mutations
gymreklab's Repositories
gymreklab/GangSTR
A tool for profiling long STRs from short reads
gymreklab/mutea-autosomal
Mutation rate analysis of autosomal loci
gymreklab/STRDenovoTools
Toolkit for calling and analyzing de novo STR mutations
gymreklab/chips
Simulation tool for ChIP- and other -seq experiments
gymreklab/cse185-spring19
Course website for CSE 185 Spring 2019
gymreklab/ssc-denovos-paper
Scripts and notebooks for generating results in Mitra et al. 2020
gymreklab/dbstr
dbstr
gymreklab/1000Genomes-TR-Analysis
Scripts for analysis of TR callsets in 1000G high coverage data
gymreklab/agent-bind-analyses
gymreklab/gymreklab-aws-batch
Framework for running jobs on AWS batch
gymreklab/SISTR
Selection Inference on Short Tandem Repeats (SISTR): A method to measure negative selection at short tandem repeats
gymreklab/STR-Evolution-Review
Scripts used for analysis in Verbiest et al.
gymreklab/BXD-STR-Mutator-Manuscript
gymreklab/str-ngs-simulator
gymreklab/cse185-course-docker
Dockerfile for UCSD course CSE185 (Advanced Bioinformatics Laboratory)
gymreklab/cse185-demo-project
Demo CSE185 Project
gymreklab/cse185-spring20
Course website for CSE 185 Spring 2020
gymreklab/cse284-spring20
Course website for CSE 284 Spring 2020
gymreklab/gymreklab-misc
Miscellaneous lab items
gymreklab/gymreklab-primers
Github primer!
gymreklab/gymreklab.github.io
Automatically redirects to gymreklab.com
gymreklab/ldsc
LD Score Regression (LDSC)
gymreklab/nbgrader
A system for assigning and grading notebooks
gymreklab/pangenome-sandbox
gymreklab/pgc_analysis
gymreklab/qqman
Draws Manhattan plot and QQ plot using plink assoc output.
gymreklab/str-tf-spacing
Exploring the role of tandem repeats in regulatory element spacing
gymreklab/STREvolution
gymreklab/trans-eQTL
gymreklab/TReeOfLife
Cross-species analysis of tandem repeat variation