H3ABioNet

South Africa

Pinned Repositories

chipimputation
Genotype Imputation Pipeline for H3Africa
Language:Nextflow19 11 1520
genesis2
Implementation of the Genesis 2 tool
Language:Java0 7 270
H3ABionet-SOPs
Standard operating procedures for H3ABionet data processing and analyses
Language:HTML10 13 1221
h3abionet16S
H3ABioNet 16S rDNA diverstity analysis package
Language:Common Workflow Language18 16 316
h3agatk
Language:Common Workflow Language21 16 814
h3agwas
GWAS Pipeline for H3Africa
Language:Nextflow98 16 3365
h3agwas-docker
Language:Dockerfile4 7 01
h3agwas-examples
Language:C++8 7 05
h3avarcall
H3A variant calling pipeline
Language:Shell6 9 18
TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
Language:Nextflow19 9 3513

H3ABioNet's Repositories

h3abionet/h3agwas
GWAS Pipeline for H3Africa
Language:Nextflow98 16 3365
h3abionet/chipimputation
Genotype Imputation Pipeline for H3Africa
Language:Nextflow19 11 1520
h3abionet/TADA
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
Language:Nextflow19 9 3513
h3abionet/H3ABionet-SOPs
Standard operating procedures for H3ABionet data processing and analyses
Language:HTML10 13 1221
h3abionet/h3agwas-examples
Language:C++8 7 05
h3abionet/h3agwas-docker
Language:Dockerfile4 7 01
h3abionet/h3ameta
H3ABioNet Metagenomics Workflow
Language:HTML4 15 35
h3abionet/recalling
Scripts for recalling several available datasets. The final output will be used by different H3A projects, e.g. ADME, refpanel. An improved fork of this repos is here: https://github.com/grbot/varcall
Language:Nextflow3 7 02
h3abionet/african_microbiome_portal
Language:JavaScript2 6 0
h3abionet/cvd
Phenotype harmonization pipeline
Language:Python2 8 02
h3abionet/h3aphenstds
2 8 01
h3abionet/afpo
AfPO: African Population Ontology
Language:Makefile1 7 21
h3abionet/african_genomics_medicine_portal
This is the African Genomic Medicine Portal that provides information about African genomics and variation with regards to pharmocology and disease. AGMP
Language:JavaScript1 15 232
h3abionet/dec-2020-hackathon-stream1
Language:Nextflow1 7 01
h3abionet/popfreqs
Language:Nextflow1 7 02
h3abionet/RefGraph_denovo_building
Language:Nextflow1 10 02
h3abionet/vcfreport
Produces stats on a vcf panel
Language:Nextflow1 8 01
h3abionet/genesis2
Implementation of the Genesis 2 tool
Language:Java0 7 270
h3abionet/african_microbiome_portal_data
Raw and corrected data with correction python notebook
Language:Jupyter Notebook6 0
h3abionet/african_microbiome_portal_docker
General Docker Configuration
Language:Dockerfile6 0
h3abionet/chipimputation_evaluate_chips
Language:Nextflow4 02
h3abionet/chipimputation_test_data
Language:Nextflow4 01
h3abionet/FAIR_software_checklist
FAIR Software Checklist
6 0
h3abionet/Feature-Engineering
Language:Jupyter Notebook8 0
h3abionet/H3ABioNet-ML-glossary
The ML Glossary developed by H3ABioNet
Language:HTML8 105
h3abionet/HPCBio-Refgraph_pipeline
Language:Shell12 316
h3abionet/imputationserver-docker
Docker Image for Michigan Imputation Server
Language:Dockerfile2 0
h3abionet/node-accreditation
Collection of scripts and items for node accreditation
Language:Nextflow6 12
h3abionet/uct-microbiome-2017
Schedule and links to slides and tutorials of the UCT microbiome 2017 workshop
Language:Ruby6 0
h3abionet/web-themes
Base themes for web projects
6 0