h3abionet/h3agwas

Issues

• module numpy has no attribute "float"

  #40 opened a year ago by Devinaseeruttun
  14

• Fine-mapping

  #41 opened a year ago by ZoeGerber
  2

• mask didn't work in the call2plink workflow

  #43 opened a year ago by Zhenghongc
  1

• Error running association pipeline with Gemma

  #20 opened 2 years ago by PhilPalmer
  4

• error on running code

  #39 opened 2 years ago by skr3178
  1

• Support PGEN, BGEN, VCF

  #29 opened 5 years ago by shaze
  1

• AWS Batch issue

  #36 opened 3 years ago by shaze
  2

• Illumina cluster file for H3Africa chip

  #37 opened 3 years ago by esohkevin
  1

• Non roman characters in sample sheet

  #4 opened 7 years ago by shaze
  0

• Provide sample data and a valid configuration file for running call2plink

  #31 opened 4 years ago by mturkson23
  0

• Cannot clone to Windows due to directory name

  #30 opened 4 years ago by lvclark
  1

• Confirm intention in templates/removeRelInds.py

  #11 opened 4 years ago by getconor
  2

• Python version issues?

  #12 opened 4 years ago by alyaaawad
  4

• unlabelled params in 'illumina2lgen' process in topbottom.nf

  #22 opened 4 years ago by BobFonix
  1

• batchReport.py requires additional str formatting

  #23 opened 4 years ago by BobFonix
  1

• qc.nf fails during getDuplicateMarkers due to chr prefix / non-autosomal chrs

  #24 opened 4 years ago by PhilPalmer
  6

• PCA plot not being included in the analysis report

  #28 opened 5 years ago by gkatagi
  1

• Error checking code assumes data is local

  #27 opened 5 years ago by shaze
  0

• Trying to run qc.nf and it's failing findRelatedIndiv

  #25 opened 5 years ago by raonyguimaraes
  3

• plink-qc issues

  #21 opened 6 years ago by azzaea
  8

• Question: interpreting association results

  #14 opened 6 years ago by PhilPalmer
  4

• Error executing doReport process

  #18 opened 6 years ago by PhilPalmer
  2

• Why does plink-qc.nf check for samplesheet, sample.phe, and idatpat?

  #16 opened 6 years ago by mchimenti
  17

• Using continuous phenotypic data for an association study

  #17 opened 6 years ago by PhilPalmer
  3

• Conflict between plink for GWAS and plink the networking tool on Linux

  #13 opened 6 years ago by esohkevin
  2

• Report clean-up non-missing data

  #10 opened 7 years ago by shaze
  0

• Anomalies and extras in topbottom.nf

  #9 opened 7 years ago by shaze
  0

• Support plink 2

  #8 opened 7 years ago by shaze
  0

• Convert the Wiki to one or more doc files within a dedicated directory in the repo

  #6 opened 7 years ago by getconor
  2

• Improve existing installation and setup documentation

  #7 opened 7 years ago by getconor
  0

• Not possible to copy ami-9ca7b2fa AWS AMI storage snapshot

  #2 opened 7 years ago by getconor
  3

• Reporting needs improvement

  #5 opened 7 years ago by shaze
  0

• Autosomal SNPs

  #3 opened 7 years ago by shaze
  0