shaze

I lecture in the School of Electrical & Information Engineering at Wits, and am a senior scientist at the Sydney Brenner Institute for Molecular Bioscience.

University of the WitwatersrandJohannesburg

Pinned Repositories

baobab.lims
Baobab LIMS is an open-source laboratory information management system (LIMS)
Language:JavaScript0 0 00
bs
Illumina Basespace Download
Language:Nextflow0 1 00
covid19za
COVID 19 Data and Dashboard for South Africa
Language:Jupyter Notebook0 0 00
dockers
Language:Dockerfile0 1 00
dockstore-tool-bamstats
A repo for the BAMStats command, used as the tutorial for Dockstore
Language:Shell0 1 00
genesis
Population structure and PCA viewer
Language:Java4 2 94
GS
Language:Perl1 0 00
nextflow-course
Language:Nextflow6 1 05
pbcall
Simple quick and dirty workflow for calling PacBio data
Language:Nextflow1 1 02
wcdest
Automatically exported from code.google.com/p/wcdest
Language:TeX4 1 16

shaze's Repositories

shaze/nextflow-course
Language:Nextflow6 1 05
shaze/genesis
Population structure and PCA viewer
Language:Java4 2 94
shaze/wcdest
Automatically exported from code.google.com/p/wcdest
Language:TeX4 1 16
shaze/GS
Language:Perl1 0 00
shaze/pbcall
Simple quick and dirty workflow for calling PacBio data
Language:Nextflow1 1 02
shaze/baobab.lims
Baobab LIMS is an open-source laboratory information management system (LIMS)
Language:JavaScript0 0 00
shaze/bs
Illumina Basespace Download
Language:Nextflow0 1 00
shaze/covid19za
COVID 19 Data and Dashboard for South Africa
Language:Jupyter Notebook0 0 00
shaze/dockers
Language:Dockerfile0 1 00
shaze/g2
Language:Java0 1 00
shaze/encrypt
Nextflow pipeline for encrypting data files
shaze/GAS_Scripts_Reference
Scripts and reference files to type Group A Streptococcus
Language:Perl0 0
shaze/h3acnvcalls
Supporting material for H3Africa Structural and Copy Number Variant paper: summary data and scripts
Language:Nextflow1 0
shaze/h3africa-structural-cnv
Scripts and results for the H3Africa paper on structural and copy number variants
1 0
shaze/haggadah
Language:TeX
shaze/idat
Simple code to manage idat files
Language:Python1 01
shaze/JanOw_Dependencies
Language:Perl0 0
shaze/ltB
YANLT
Language:Python1 05
shaze/misc
Language:Batchfile1 0
shaze/public-dockers
Docker files
Language:Dockerfile0 0
shaze/recall
Deepvariant + GLnexus
1 0
shaze/slurmgluster
Taking jobs to storage
Language:Nextflow1 0
shaze/speedseq
A flexible framework for rapid genome analysis and interpretation
Language:C0 0
shaze/ssh
Some helpful configs for using ssh
1 0
shaze/stratify
Teaching example for CI (Jenkins and Travis)
Language:Python1 035
shaze/synth2
Workflow for creating artificial GWAS data sets based on real data
Language:C1 0
shaze/useful
odds and ends that I use for my own work, not intended for others but go for it
Language:Python1 0
shaze/weights
Language:Python1 06
shaze/witsmcq
For providing feedback to students using the Wits MCQ card system
Language:Python1 0
shaze/ymthaplotools
Simple workflow for assigning Y-haplogroups using the AMY-tree program
Language:Python1 0