lvclark
Computational biologist at Seattle Children's. Lots of prior work in plant genetics, population genetics, and polyploidy.
Seattle Children's Research InstituteFlorida, USA
Pinned Repositories
cpsc499_fall_2018
Course materials for R programming and bioinformatics
dd5Echarsheet
Dungeons & Dragons 5e Stat and Roll Mod Calculator
polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
polysat
polysat 1.7: tools for polyploid microsatellite analysis
quant_gen
R functions for quantitative genetics
R_genetics_conv
R functions for conversion of genetic data formats
R_plotfun_LVC
Functions to help make nice plots in R.
tagdigger
Search for tags in FASTQ files from GBS or RAD-seq
TASSELGBS_combine
Pipeline to combine SNP datasets from multiple TASSEL-GBS databases
lvclark's Repositories
lvclark/polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
lvclark/polysat
polysat 1.7: tools for polyploid microsatellite analysis
lvclark/R_genetics_conv
R functions for conversion of genetic data formats
lvclark/tagdigger
Search for tags in FASTQ files from GBS or RAD-seq
lvclark/cpsc499_fall_2018
Course materials for R programming and bioinformatics
lvclark/quant_gen
R functions for quantitative genetics
lvclark/TASSELGBS_combine
Pipeline to combine SNP datasets from multiple TASSEL-GBS databases
lvclark/16S-rDNA-dada2-pipeline
dada2 Nextflow pipeline
lvclark/2019-09-26-illinois
lvclark/adegenet
adegenet: a R package for the multivariate analysis of genetic markers
lvclark/bioc-intro
Bioconductor data science introduction
lvclark/covid19champaign
Little wrapper function to plot daily COVID-19 cases
lvclark/EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
lvclark/fibertools-rs
Tools for fiberseq data written in rust.
lvclark/GAPIT3
Genome Association Predict Integrate Tools
lvclark/GWASpoly
GWAS software that can handle autopolyploids
lvclark/H3ABionet-SOPs
Standard operating procedures for H3ABionet data processing and analyses
lvclark/h3agwas
GWAS Pipeline for H3Africa
lvclark/IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
lvclark/labmeeting
Demonstration repository for lab meeting
lvclark/lvclark.github.io
My website
lvclark/lvclark.r-universe.dev
List of packages for R-universe
lvclark/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
lvclark/Miscanthus
Miscanthus traits
lvclark/paralog_id
Exploration and testing of methods to identify paralogs in GBS data
lvclark/polyRADtutorials
Supplementary tutorials for polyRAD
lvclark/pyseer
SEER, reimplemented in python 🐍🔮
lvclark/r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
lvclark/R_Python_video_series
Files for video tutorial series
lvclark/swc-forklesson
Repository for Software Carpentry classes to fork and submit pull requests to