hadjiprocopis
Artificial Intelligence, Bioinformatics, Medical Image Processing & Analysis, Single-cell Imaging, Photogrammetry. In C, C++, Java, Perl, UNIX, bash, R, SQL ..
1+1=1
Pinned Repositories
medical-image-analysis
Various programs and libraries for the analysis of MRI brain scans (UNC and ANALYZE formats). From my work at the Institute of Neurology.
neural-parser
np is a language to create neural networks and connect them together in order to create entities of neural networks. (C, bash and perl). It depends on my Neural Network Engine (see NNengine in this repository).
perl-gcc-builtins
access GCC compiler builtin functions from Perl via XS
perl-inline-cuda
Provides a preliminary Perl Inline::CUDA module until migration to CPAN. Inline::CUDA allows inlining in Perl C-or-C++-code with NVIDIA's CUDA extensions.
protein-hops
Reads protein functional associations (e.g. from STRING-DB) and finds direct (0-hops) or indirect (1,2-hops) protein-links between a pair of proteins (C/C++).This work was done while working at the Institute of Cancer Research in London in association with people from the Erler Lab.
pthreadpool
A thread-pool implementation for C++ written by Johan Hanssen Seferidis. It is a dependency for protein-hops and possibly other programs I am distributing here.
R-and-friends
A collection of R procedures bundled inside a bash script. The bash script can be run from the command line and provides a very convenient way to execute tedious R procedures with command-line parameters, debug capabilities and parallelisation when appropriate. From my time at the Institute of Cancer Research (Erler Lab, Linding Lab).
statistics-covid
collect data from online providers relating to the COVID19 epidemic (confirmed cases, etc.) over time and for different geographical locations
hadjiprocopis's Repositories
hadjiprocopis/pthreadpool
A thread-pool implementation for C++ written by Johan Hanssen Seferidis. It is a dependency for protein-hops and possibly other programs I am distributing here.
hadjiprocopis/bundler_sfm
Bundler Structure from Motion Toolkit
hadjiprocopis/cartesian
Enumerate an n-dimensional list of integers providing an optional selector. For example for a 3D list from 0 to 3 the enumeration is 000, 001, 002, 010, 011, 012, ... 222. A selector on this list is 0,1:2,* which will fix the first dimension to 0, the second to all integers between 1 and 2 and the last dimesnion would span the whole 0-3 range of the Cartesiabn.
hadjiprocopis/medical-image-analysis
Various programs and libraries for the analysis of MRI brain scans (UNC and ANALYZE formats). From my work at the Institute of Neurology.
hadjiprocopis/protein-hops
Reads protein functional associations (e.g. from STRING-DB) and finds direct (0-hops) or indirect (1,2-hops) protein-links between a pair of proteins (C/C++).This work was done while working at the Institute of Cancer Research in London in association with people from the Erler Lab.
hadjiprocopis/R-and-friends
A collection of R procedures bundled inside a bash script. The bash script can be run from the command line and provides a very convenient way to execute tedious R procedures with command-line parameters, debug capabilities and parallelisation when appropriate. From my time at the Institute of Cancer Research (Erler Lab, Linding Lab).
hadjiprocopis/clusterator
hadjiprocopis/containers
Implements an n-dimensional sparse or "full" array backed on a 1D flat array. It depends on the 'Cartesian' package which can be downloaded from my repository (e.g. https://github.com/hadjiprocopis/containers)
hadjiprocopis/DUTC
hadjiprocopis/genetic-solutions
This is an example of how I use JGAP (genetic algorithms library) in order to solve a set of equations. Proof-of-concept.
hadjiprocopis/Geo-BoundingBox
change me
hadjiprocopis/Geo-OSM-Overpass-Plugin
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hadjiprocopis/Geo-OSM-Overpass-Plugin-ElementInfo
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hadjiprocopis/Geo-OSM-Overpass-Plugin-FetchPedestrianCrossings
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hadjiprocopis/Geo-OSM-Overpass-Plugin-FetchStreetLamps
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hadjiprocopis/Geo-OSM-Overpass-Plugin-FetchTrafficSignals
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hadjiprocopis/Geo-OSM-Overpass-Plugin-ParseXML
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hadjiprocopis/hadjiprocopis_utils
various utilities, e.g. an md5(), mutual information etc.
hadjiprocopis/histocurse
A Java implementation of a multidimensional histogram backed on dense/conventional OR sparse array. Extremely efficient when number of dimensions is large and back-store is sparse array. This module depends on other projects which can be found on my repo here. See README below to see what you need to download.
hadjiprocopis/nick_test
coding test
hadjiprocopis/statistics
Various statistics, sorting, clustering algorithms e.g. KMeans clustering
hadjiprocopis/warning
Have you found my software useful but you have deemed me insufficient in a job interview then please email me - I would like to know if you are using my work.
hadjiprocopis/WWW-Mechanize-Chrome-Screenshot
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hadjiprocopis/xa_stats
The author of this package is Isaac M. Neuhaus (isaac.neuhaus@bms.com). It is included in my repository as a dependency