hakyimlab

Pinned Repositories

gtex-gwas-analysis
Language:Shell20 12 35
MetaXcan
MetaXcan software and manuscript
Language:Python140 16 11592
mixqtl
Total and allele specific read based cis-QTL, fine-mapping, and prediction
Language:R9 3 03
phenomexcan
PhenomeXcan: mapping the genome to the phenome through the transcriptome
Language:Jupyter Notebook11 5 11
PredictDB-Tutorial
Tutorial for running the PredictDB pipeline with GEUVADIS data
Language:R9 10 911
PredictDB_Pipeline_GTEx_v7
PredictDB Pipeline for GTEx v7 data
Language:R18 13 49
PredictDBPipeline
Language:Python16 14 710
PrediXcan
PrediXcan Project
Language:Python104 18 1157
summary-gwas-imputation
harmonization, liftover, and imputation of summary statistics from GWAS
Language:Python31 12 2320
ukbrest
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
Language:Python38 6 622

hakyimlab's Repositories

hakyimlab/MetaXcan
MetaXcan software and manuscript
Language:Python140 16 11592
hakyimlab/PrediXcan
PrediXcan Project
Language:Python104 18 1157
hakyimlab/gtex-gwas-analysis
Language:Shell20 12 35
hakyimlab/PredictDB_Pipeline_GTEx_v7
PredictDB Pipeline for GTEx v7 data
Language:R18 13 49
hakyimlab/PredictDB-Tutorial
Tutorial for running the PredictDB pipeline with GEUVADIS data
Language:R9 10 911
hakyimlab/brainxcan
Language:Python8 3 41
hakyimlab/Training
Language:TeX8 12 49
hakyimlab/HGEN471-class
A repository for all things related to the Winter course, HGEN471
Language:HTML5 3 02
hakyimlab/psychencode
https://hakyimlab.github.io/psychencode/
Language:R5 5 23
hakyimlab/QGT-Columbia-HKI-repo
https://hakyimlab.github.io/QGT-Columbia-HKI-repo/
Language:R3 9 03
hakyimlab/PredictDb-nextflow
Language:R2 5 24
hakyimlab/rat-genomic-analysis
https://hakyimlab.github.io/rat-genomic-analysis/
Language:HTML2 10 01
hakyimlab/web-homepage
https://hakyimlab.org
Language:HTML2 12 11
hakyimlab/deep-learning-genomics
Summer immersion syllabus in deep learning in genomics
1 3 0
hakyimlab/nn-zero-to-hero
Neural Networks: Zero to Hero
Language:Jupyter Notebook1 1 0
hakyimlab/Rat_Genomics_Paper_Pipeline
Language:R1 2 1
hakyimlab/rat_genomics_paper_pipeline_2024
https://hakyimlab.github.io/rat_genomics_paper_pipeline_2024/
Language:Python1 3 0
hakyimlab/web-lab-notes-quarto
https://lab-notes.hakyimlab.org
Language:HTML1 1 0
hakyimlab/2024_T32_GME_Annual_Hackathon
Github repo for the Genetic Mechanisms and Evolution Training Grant 2024 annual hackathon
Language:HTML0 0
hakyimlab/archived-web-lab-notes
https://archived-web-lab-notes.hakyimlab.org
Language:HTML8 0
hakyimlab/brainxcan-docs
Language:HTML1 0
hakyimlab/enformer-pytorch
Language:Python2 0
hakyimlab/Hands-on-Training
https://hakyimlab.github.io/Hands-on-Training/
Language:R10 03
hakyimlab/ptrs-tf
Building PTRS model using TensorFlow
Language:Jupyter Notebook2 0
hakyimlab/ptrs-ukb
Calculate PTRS for UKB data
Language:HTML2 0
hakyimlab/RatXcan_Training
https://sabrina-mi.github.io/RatXcan_Training/
Language:Python
hakyimlab/sabrina-deep-learning-in-genomics
https://sabrina-dl.hakyimlab.org
Language:Jupyter Notebook2 0
hakyimlab/TFPred-snakemake
Language:HTML2 0
hakyimlab/web-course-material
https://course-material.hakyimlab.org
Language:HTML2 0
hakyimlab/Yanyus-misc-tools
A scripting gallery containing random this and that.
Language:Python2 0