Full DB for missing genes

Question

Full DB for missing genes

Closed this issue 6 years ago · 6 comments

Hi, I found that the gene I am interested is missing from predictDB.
And I think that this gene was removed due to FDR correction as I saw one related question from FAQ.
Can I get the full prediction model without missing genes? Maybe the older version contain all genes.

Thank you!

Answer 1 · 2017-09-07T15:49:26.000Z

Hi there,
We can share the model with you, but to state the obvious, the prediction quality may not be very good. What gene are you interested in? I can get back to you if that gene exists in the full models.

Answer 2 · 2017-09-07T18:51:01.000Z

There are two genes I am interested in. But I am a bit concerned that this list is posted on your website. Thanks for your consideration.

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-------- 원본 이메일 --------보낸 사람: Scott Dickinson <notifications@github.com> 날짜: 17/9/8 오전 12:49 (GMT+09:00) 받은 사람: hakyimlab/PrediXcan <PrediXcan@noreply.github.com> 참조: JYE-Lee <jylee521@gmail.com>, Author <author@noreply.github.com> 제목: Re: [hakyimlab/PrediXcan] Full DB for missing genes (#28) Hi there, We can share the model with you, but to state the obvious, the prediction quality may not be very good. What gene are you interested in? I can get back to you if that gene exists in the full models. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread. {"api_version":"1.0","publisher":{"api_key":"05dde50f1d1a384dd78767c55493e4bb","name":"GitHub"},"entity":{"external_key":"github/hakyimlab/PrediXcan","title":"hakyimlab/PrediXcan","subtitle":"GitHub repository","main_image_url":"https://cloud.githubusercontent.com/assets/143418/17495839/a5054eac-5d88-11e6-95fc-7290892c7bb5.png","avatar_image_url":"https://cloud.githubusercontent.com/assets/143418/15842166/7c72db34-2c0b-11e6-9aed-b52498112777.png","action":{"name":"Open in GitHub","url":"https://github.com/hakyimlab/PrediXcan"}},"updates":{"snippets":[{"icon":"PERSON","message":"@ScottPDickinson in #28: Hi there,\r\nWe can share the model with you, but to state the obvious, the prediction quality may not be very good. What gene are you interested in? I can get back to you if that gene exists in the full models."}],"action":{"name":"View Issue","url":"#28 (comment)"}}}

Answer 3 · 2017-09-13T03:01:00.000Z

Dear Dr. Dickinson, Hi, just a reminder. Have you checked the full model? Thank you. JYLee

Answer 4 · 2017-09-13T03:14:19.000Z

Hi JYLee, Perhaps we should communicate over email directly? My email is spdickinson88 at gmail dot com. Scott

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On Sep 12, 2017, at 10:01 PM, JYE-Lee ***@***.***> wrote: Dear Dr. Dickinson, Hi, just a reminder. Have you checked the full model? Thank you. JYLee — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#28 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AKNowoV9_xi-b6vFsoURKC6ykkAD-fOyks5sh0VsgaJpZM4PP5OR>.

Answer 5 · 2018-04-03T04:33:22.000Z

Hello. I also cannot find many genes of my interest from the prediction model.
Is there way to include other genes (even though they present poor prediction quality) in the model?

Answer 6 · 2018-05-10T06:13:24.000Z

Hi Yunju,

I am sorry for the delay, apparently we missed this message. We can provide the full set of models (i.e. without filtering for prediction performance) if you still need them. You can contact me privately by sending an e-mail to rodbonazzola at gmail dot com.

Best,
Rodrigo