Not clear with the command to run svtools

[amrita1983]

Hello,

Trying to run svtools to convert Manta generated diploidSV.vcf file, into bedpe but cannot find the command to run it.
I am using this command:
svtools vcftobedpe diploidSV.vcf

but its giving error.

[abelhj]

Try svtools vcftobedpe -i diploidSV.vcf

…

On Fri, Jan 18, 2019 at 4:01 AM amrita1983 ***@***.***> wrote: Hello, Trying to run svtools to convert Manta generated diploidSV.vcf file, into bedpe but cannot find the command to run it. I am using this command: svtools vcftobedpe diploidSV.vcf but its giving error. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#276>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AH4xwfmNWxJOWEcOiD3rZJ1qtJLw6R1mks5vEZuEgaJpZM4aHlpR> .

[amrita1983]

thanks it worked fine