Pinned Repositories
avro-tools
A collection of tools that help me work with Avro
hbase-tornado-demo
A demonstration of how to use HBase and Tornado to build a web application
IntroD4
Introduction talk to D3
personal-genome-analysis
Code used in teaching personal genome analysis courses
protoboard
A dashboard built with Tornado and Protovis
py3quizlet2
Python wrapper for Quizlet API
pyhbase
A Python client for the HBase Avro interface
whirr-demo
An example of how to use Whirr to work with Hadoop
wikichallenge
An implementation of Dell Zhang's solution to Wikipedia's Participation Challenge on Kaggle
hammer's Repositories
hammer/pyhbase
A Python client for the HBase Avro interface
hammer/ocaml-getting-over-the-hump
hammer/Neoantigen-Identification-Challenge
hammer/Statistical_Rethinking_with_brms_ggplot2_and_the_tidyverse
Reexpress McElreath’s "Statistical Rethinking" (2015) by fitting the models in brms, plotting with ggplot2, and data wrangling with tidyverse-style syntax.
hammer/adv-r
Advanced R programming: a book
hammer/jtleek.github.io
Website
hammer/mhc_experiments
hammer/ML-Systems
papers on large-scale machine learning and systems
hammer/Basset
Convolutional neural network analysis for predicting DNA sequence activity.
hammer/charleston-sc-tech-welcome
Welcome to the Tech scene in Charleston, SC!
hammer/cs231n.github.io
Public facing notes page
hammer/data_pipeline
Code for the data processing pipeline
hammer/dx-toolkit
DNAnexus platform client libraries.
hammer/elasticluster
Create clusters of VMs on the cloud and configure them with Ansible
hammer/gadf
hammer/genecard-slash-command
Getting started with Slack slash commands
hammer/genetics-v2d-data
Variant to disease dataset workflows for Open Targets Genetics
hammer/genetics-v2g-data
Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics
hammer/grapaling
Trying out GrapAL
hammer/lltools
Language learning tools
hammer/mhctools
Python interface to running command-line and web-based MHC binding predictors
hammer/ocaml-aws
Generated OCaml bindings for Amazon Web Services
hammer/oml
OCaml Math Library
hammer/pubmedextract
extracting demographics from tables in pubmed papers
hammer/requests
Python HTTP Requests for Humans™
hammer/single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
hammer/tensorflow
Open source software library for numerical computation using data flow graphs.
hammer/test-book
https://blissful-einstein-69cf1e.netlify.com/
hammer/using-tf
hammer/varcode
Library for manipulating genomic variants and predicting their effects