harbourlab/uphyloplot2

Issues

• The branch lengths and colors in the results of UPhyloPlot2

  #27 opened a month ago by suhuanhou
  0

• draw phylogenetic trees

  #26 opened a month ago by yitengfei120011
  0

• Can I set the width of the tree branches and distance between each two tree branches?

  #20 opened 2 years ago by yuezhao97
  1

• Missing sub clones

  #17 opened 2 years ago by jfwise
  2

• Mapping subclones loss/gains

  #16 opened 3 years ago by angkoomin
  6

• Uphyloplot2 with different samples

  #25 opened 7 months ago by tetsy2
  0

• Leiden - script fail

  #24 opened a year ago by HowieJM
  2

• how to choose tree length and can one use a partitioning method other than random tree?

  #18 opened 2 years ago by andynkili
  0

• Compatibility with inferCNV v1.16.0

  #23 opened a year ago by gitUser128954
  1

• Error when running code uphyloplot2 version 2.3 using the test data

  #19 opened 2 years ago by cxlwj527
  2

• can be used for copykat?

  #21 opened 2 years ago by skytguuu
  0

• Figure 2 of your Nat Common paper

  #5 opened 4 years ago by s849
  9

• infercnv::run error - Error in if (run_arguments$HMM) { : argument is of length zero

  #15 opened 3 years ago by angkoomin
  0

• Using Uphyloplot2 with CaSpER data

  #13 opened 3 years ago by bianchiniriccardo95
  2

• compatibility with infercnv 1.9.1

  #14 opened 3 years ago by zhangguangxin1234
  2

• UnicodeDecodeError: 'utf-8' codec can't decode byte 0x80 in position 178: invalid start byte

  #11 opened 3 years ago by marlaherr
  3

• Run uphyloplot2 when multiple samples

  #9 opened 3 years ago by jefferyUstc
  1

• Infercnv subcluster nomenclature

  #10 opened 3 years ago by ktessema
  3

• I can"t find the HMM_CNV_predictions.HMMi6.rand_trees.hmm_mode-subclusters.Pnorm_0.5.cell_groupings outcome

  #3 opened 4 years ago by hzongyao
  4

• Error running with cluster_by_groups set to FALSE

  #4 opened 4 years ago by s849
  1

• Phylograms look the same

  #2 opened 4 years ago by MaximilianMerz
  1

• inferCNV - when you have more than one type of reference cells

  #1 opened 4 years ago by rhlgyb
  0