Pinned Repositories
CellSorter
Classification using UMAP and kmeans
CMBHOME
MATLAB Package for Neural Data
EgocentricBoundaryCells
Matlab code for egocentric boundary cell identification in freely behaving animals
ex-gaussian
Probability densities for exponentially-modified gaussian distributions
KiloPlex
knowledge-base
repository of documentation for the hasselmo lab
mle_rhythmicity
An improved method for examining neural single unit rhythmicity using maxmimun likelihood estimation for a parametric distribution of lags.
pippin
PoInt Process Neuron
RatCatcher
A general tool for passing data to the cluster
SpeedLFP
Running speed modulation of local field potential frequency/amplitude/etc
Hasselmonians's Repositories
hasselmonians/CMBHOME
MATLAB Package for Neural Data
hasselmonians/EgocentricBoundaryCells
Matlab code for egocentric boundary cell identification in freely behaving animals
hasselmonians/KiloPlex
hasselmonians/CellSorter
Classification using UMAP and kmeans
hasselmonians/ex-gaussian
Probability densities for exponentially-modified gaussian distributions
hasselmonians/pippin
PoInt Process Neuron
hasselmonians/RatCatcher
A general tool for passing data to the cluster
hasselmonians/BandwidthEstimator
Estimate optimal bandwidth parameter for spike train smoothing using MLE leave-one-out cross-validation.
hasselmonians/hasselmo-tracking
fundamental algorithm of neocortical function -- no big deal
hasselmonians/InVitro
Standard matlab toolbox for analyzing invitro data
hasselmonians/knowledge-base
repository of documentation for the hasselmo lab
hasselmonians/light-modulation
determining whether firing rate is modulated by light/dark conditions
hasselmonians/ln-model-of-mec-neurons
Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.
hasselmonians/neural-decoder
Produces a model of the relationship between an extrinisic observable signal and an intrinsic covarying spike train
hasselmonians/Speed_Coding
hasselmonians/synaptiplicative-response
hasselmonians/BeEPy
Behavioral + electrophysiology analyses in python
hasselmonians/exp-decay-models
find conductance-based models that satisfy exponential decay in firing rate
hasselmonians/FIt-SNE
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
hasselmonians/ImageJ-Automated-Cell-Counter-Algorithm
An algorithm that facilitates cell counting via NIH ImageJ software
hasselmonians/Kilosort2
Fast spike sorting with drift correction for up to a thousand channels
hasselmonians/LaChance_Hasselmo_POR_RSC
Code for LaChance and Hasselmo, 2024
hasselmonians/MagicMaze
hasselmonians/masked_rpm
hasselmonians/MLE-time-course
Estimate the bandwidth parameter for smoothing spike-train data.
hasselmonians/MS-GABAergic-project
Code for Robinson et al., 2024
hasselmonians/parameter-space-neural-models
Exploring the parameter spaces of neural models
hasselmonians/Programming-iterview
A simple jupyter notebook to test the undergrads' programming skills.
hasselmonians/RodentReconstructorUI
WIP ui for the 3D tracking pipeline
hasselmonians/tsne-wrappers
MATLAB wrappers for several commonly used t-SNE implementations