Pinned Repositories
allen-brain-data-download
frequentlyUsedRFunctions
as you'd guess, these are R functions that I use frequently, posted for the benefit of people I share code with
miscPublicHowTo
a location for stuff I've figured out and expect to do again or expect to be asked how to do it.
pipelines
Makefiles to run dockerized pipelines used in Treehouse on a single sample
rna_variant_call
DEPRECATED: See mini-var-call
small-sharable-reference-files
hbeale's Repositories
hbeale/allen-brain-data-download
hbeale/frequentlyUsedRFunctions
as you'd guess, these are R functions that I use frequently, posted for the benefit of people I share code with
hbeale/miscPublicHowTo
a location for stuff I've figured out and expect to do again or expect to be asked how to do it.
hbeale/bcbio-nextgen-vm
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
hbeale/cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
hbeale/cgl-docker-lib
hbeale/cookies
hbeale/EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
hbeale/gene_expression_outlier_accuracy
hbeale/ggplus
A set of additional functions for ggplot2
hbeale/guides
hbeale/kathryntmorrison.github.io
Website and blog
hbeale/misc-scripts
hbeale/OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
hbeale/ProTECT
hbeale/refinebio-docs
User Documentation for refine.bio
hbeale/RiboVsPolyA
hbeale/rstudio_test
hbeale/Seqware-BWA-Workflow
This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
hbeale/shell-extras
Extra Unix Shell Material
hbeale/shiny_covid_events
Shiny visualization of covid rates reported by the NYTimes
hbeale/SnapATAC
Analysis Pipeline for Single Cell ATAC-seq
hbeale/travis_rmd_test
hbeale/tumorBoardResearchReport