hdmf-dev/hdmf

Issues

• [Feature]: Update tests to use numpy 2.0

  #1177 opened 7 days ago by mavaylon1
  1

• [Bug]: Test collection fails for three tests with pytest 8.2.0

  #1114 opened 7 months ago by penguinpee
  7

• [Documentation]: Update export documentation

  #1214 opened a month ago by mavaylon1
  0

• [Bug]: Cannot write added attributes to dataset in new data type subtype

  #1213 opened a month ago by rly
  0

• [Bug]: Deprecate the ability to add scalar for a ragged column

  #1211 opened a month ago by rly
  0

• [Feature]: Python 3.8

  #1207 opened a month ago by mavaylon1
  0

• [Bug]: Accessing an indexed (ragged) column by attribute returns VectorData instead of VectorIndex

  #1210 opened a month ago by rly
  1

• [Bug]: Lack of error when writing containers that have no mapping in the TypeMap

  #1208 opened a month ago by rly
  0

• [Documentation]: Missing thumbnail for TermSet gallery

  #1203 opened 2 months ago by oruebel
  0

• [Feature]: HERD Roadmap

  #1160 opened 5 months ago by mavaylon1
  1

• [Bug]: untyped dataset of references cannot be set as expandable

  #1181 opened 2 months ago by stephprince
  0

• Bonsai GUI export to NWB

  #1196 opened 2 months ago by justidy1
  3

• [Bug]: Append does not work for Zarr Arrays (and DatasetofReferences)

  #1125 opened 3 months ago by mavaylon1
  11

• "Copy" via "export" is "larger" (10x fold in this silly example) than original!

  #1187 opened 3 months ago by yarikoptic
  5

• [Bug]: Shape should be validated on write

  #1190 opened 4 months ago by rly
  0

• [Bug]: When appending to file with newer schema, the older schema is not deleted

  #1098 opened 8 months ago by rly
  11

• [Feature]: Add support for overriding backend configuration in HDF5 datasets

  #1170 opened 3 months ago by pauladkisson
  3

• [Feature]: Replace docval with better strict type and shape validation system with type hints

  #1129 opened 6 months ago by rly
  4

• [Bug]: Regression in fresh 3.14.4

  #1186 opened 3 months ago by yarikoptic
  1

• [Bug]: warning for incorrect data shape for dataset of references

  #1191 opened 4 months ago by stephprince
  0

• [Bug]: Cannot create classes from cached extensions with references to types defined in the extension

  #1182 opened 4 months ago by rly
  0

• [Bug]: Non-DCI H5DataIO does not passthrough `maxshape` property which crashes pynwb Timeseries

  #1148 opened 4 months ago by cboulay
  1

• [Bug]: Support writing multidimensional string datasets and attributes

  #1096 opened 4 months ago by rly
  1

• Cannot write multi-dimensional string arrays

  #1137 opened 4 months ago by rly
  1

• [Bug]: Dimension Labels and Expandable Datasets Edge Cases

  #1163 opened 5 months ago by mavaylon1
  1

• [Bug]: `stacklevel=2` makes all warnings look like they're coming from docval

  #1164 opened 4 months ago by sneakers-the-rat
  2

• [Feature]: Add dictionary methods to MultiContainerInterface

  #1161 opened 5 months ago by rly
  1

• [Bug]: Defining custom class without docval prevents read

  #1159 opened 5 months ago by rly
  0

• [Feature]: Expandable datasets (HDF5)

  #1153 opened 5 months ago by mavaylon1
  2

• [Bug]: NeuroConv dev tests - Last axis of data shapes is None

  #1111 opened 8 months ago by CodyCBakerPhD
  12

• [Bug]: Compound dtype attributes are not supported

  #1099 opened 8 months ago by rly
  2

• [Feature]: Build a more robust set of test tools

  #1150 opened 5 months ago by mavaylon1
  2

• [Bug]: Extensions are not robust to order

  #1086 opened 9 months ago by rly
  6

• [Feature]: Raise warning when a container is not written because it does not map to a spec

  #1090 opened 9 months ago by rly
  1

• [Feature]: Remove zarr from core dependencies

  #1138 opened 5 months ago by rly
  8

• [Documentation]: Add Documentation/Tutorial for TypeConfigurator

  #1085 opened 5 months ago by mavaylon1
  1

• [Feature]: Support annotation of substrings with HERD or another system

  #1092 opened 9 months ago by rly
  3

• Regression: UserWarning: Unexpected keys ['value'] in spec ...

  #1142 opened 6 months ago by yarikoptic
  2

• [Bug]: np.string_ issue on Windows CI

  #1130 opened 6 months ago by CodyCBakerPhD
  1

• [Bug]: Numpy 2.0

  #1106 opened 6 months ago by mavaylon1
  0

• [Bug]: Custom class generator does not account for fields refined from parent type

  #1101 opened 8 months ago by rly
  1

• [Feature]: Running NeuroConv tests on dev branches

  #1113 opened 8 months ago by CodyCBakerPhD
  3

• [Feature]: Add support for numpy 2.0

  #1132 opened 6 months ago by bendichter
  4

• [Feature]: Add `load_namespaces` and `get_namespaces` to `HDMFIO`

  #1123 opened 7 months ago by rly
  2

• [Bug]: Resolving spec inheritance fails when attribute has same name as existing attr on another object

  #1121 opened 7 months ago by rly
  1

• [Feature]: Add an object path as a way to uniquely identify an object in the API

  #1108 opened 8 months ago by h-mayorquin
  8

• [Feature]: Refactor to reduce code complexity

  #1095 opened 9 months ago by rly
  1

• [Feature]: Global or IO-specific TypeConfigurator?

  #1087 opened 9 months ago by rly
  1

• Trimming HDMF

  #1084 opened 9 months ago by mavaylon1
  0

• HDMF Test Coverage Tracker

  #1083 opened 9 months ago by mavaylon1
  0