helenwsung

helenwsung's Stars

• UW-GAC/SISG_2023

  SISG 2023 Module 18: Computational Pipeline for WGS Data

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• xihaoli/STAARpipeline-Tutorial

  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary

  Language:R2617

• renaschweizer/congen-gatk

  This workshop guides students through the Broad Institute's Best Practices for reference-based genotyping with GATK

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• dipetkov/eems

  Estimating Effective Migration Surfaces

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• slowkoni/rfmix

  RFMIX - Local Ancestry and Admixture Inference Version 2

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• snijesh/exome_analysis

  A pipeline for analysis of exome seq from raw fastq to annotated variants

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• joellembatchou/SISG2023_Association_Mapping

  Course website for SISG 2023 Module 15

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• joanam/scripts

  Scripts to handle NGS data and other biological data

  Language:Python1810

• nt246/physalia-lcwgs

  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022

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• zhengxwen/SNPRelate

  R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

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• bodkan/admixr

  An R package for reproducible and automated ADMIXTOOLS analyses

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• bodkan/demografr

  Fast and simple simulation-based population genetic inference in R

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• bodkan/slendr

  Population genetic simulations in R 🌍

  Language:R545

• JimWhiting91/genotype_plot

  A set of functions to visualise genotypes based on a VCF

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• radcamp/radcamp.github.io

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• austinhpatton/cameroon-cichlids

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• sandrahoffberg/Amaranth-phylogenetics

  Multiple phylogenetic methods on 3RAD data

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• NathanWhelan/misc-scripts

  Miscellaneous bioinformatics scripts

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• NathanWhelan/3RAD_scripts

  Data Processing scripts for 3RAD

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• nreid/vc_tutorials

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• clairemerot/physalia_adaptation_course

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• clairemerot/Intro2PopGenomics

  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts

  Language:Shell3

• ucdavis-bioinformatics-training/2020-Variant_Analysis_Workshop

  From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.

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• ucdavis-bioinformatics-training/2023-May-Introduction-to-the-Command-Line-for-Bioinformatics

  An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.

  Language:CSS12

• seanharrington256/Lgetula_gbs

  Code repo for Harrington & Burbrink "Complex cycles of divergence and migration shape population structure in the common kingsnake species complex"

  Language:R1

• LangilleLab/microbiome_helper

  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

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• BeGenDiv/Arantes_et_al_2020

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• catpinho/illumina-read-processing

  This repository includes scripts that produce simple formatting operations on illumina .fastq files

  Language:Python1

• catpinho/Format-conversion

  This repository includes scripts that allow converting to and from variously popular formats in population genetics

  Language:Python1

• catpinho/filter_RADseq_data

  Language:Python1