helxplatform/dug

Issues

• Add Black for code formatting

  #350 opened 9 months ago by gaurav
  0

• Allow for alternate annotator classes

  #329 opened a year ago by braswent
  1

• Tranql Auto-complete

  #226 opened a year ago by YaphetKG
  3

• Search UI Autocomplete

  #228 opened a year ago by frostyfan109
  0

• Improve organization of Dug import scripts

  #317 opened a year ago by gaurav
  0

• Create URL generator for HEAL

  #313 opened a year ago by gaurav
  0

• CDE Harmonization

  #221 opened 2 years ago by oihawkins
  19

• Harmonization phase2

  #218 opened 2 years ago by oihawkins
  3

• Epic: HEAL Harmonization

  #224 opened 3 years ago by oihawkins
  7

• Patchy results for gene/drug queries

  #237 opened 2 years ago by cbizon
  4

• Question: What should a search for CHD return?

  #236 opened 2 years ago by cbizon
  4

• How to handle "disease" as text in a search?

  #239 opened 2 years ago by cbizon
  2

• A user can create a json file of Dug search results to take outside of Dug for further analyses

  #249 opened 2 years ago by oihawkins
  3

• implement a user's search history in their user profile

  #214 opened 2 years ago by oihawkins
  0

• give dug users context for missing search tiles

  #213 opened 2 years ago by oihawkins
  2

• investigate new "expand" icons for dug interface

  #215 opened 2 years ago by oihawkins
  0

• What would it take to get Dug/HeLx Separation?

  #220 opened 2 years ago by oihawkins
  0

• Improve NER on Dug

  #261 opened 2 years ago by oihawkins
  2

• Test coverage for Tranql Interface

  #167 opened 2 years ago by YaphetKG
  0

• Tranql Support for SKIP and LIMIT as keywords instead of where conditions

  #216 opened 2 years ago by oihawkins
  0

• Bio-NER for Dug on HEAL

  #223 opened 2 years ago by oihawkins
  1

• Semantic Search Metrics

  #217 opened 2 years ago by oihawkins
  1

• Annotation Performance Tweaks for Dug deployment

  #210 opened 2 years ago by oihawkins
  2

• PhenX Parser

  #162 opened 2 years ago by cschreep
  2

• Improving the scaling of Dug

  #263 opened 2 years ago by oihawkins
  2

• Automatic backups

  #157 opened 2 years ago by cschreep
  5

• Update Quickstart

  #161 opened 2 years ago by cschreep
  0

• Define ingestion process and implement v1

  #256 opened 2 years ago by krobasky
  5

• updated internal documentation

  #251 opened 2 years ago by oihawkins
  0

• updated user-facing documentation

  #250 opened 2 years ago by oihawkins
  0

• Variable View

  #230 opened 2 years ago by oihawkins
  12

• identify user metrics for dug

  #252 opened 2 years ago by oihawkins
  1

• Investigate and use Dag Factory for Roger workflow

  #219 opened 2 years ago by oihawkins
  3

• ingest the Ousmane dataset

  #255 opened 2 years ago by krobasky
  5

• Database schema (Data source repository)

  #257 opened 2 years ago by YaphetKG
  1

• TranQL Schema Construction/Caching

  #258 opened 2 years ago by frostyfan109
  1

• Biolink type-based filtering

  #231 opened 2 years ago by frostyfan109
  4

• Incomplete concept results

  #254 opened 2 years ago by frostyfan109
  2

• redundant (disease) (disease)

  #238 opened 2 years ago by cbizon
  3

• Simplification and Normalization of Standard Apps Deployment

  #225 opened 3 years ago by oihawkins
  2

• Stray ")" in knowledge graph

  #235 opened 3 years ago by cbizon
  1

• HEAL - Enable Ingest of NIDA metadata (NIDA Datashare Parser)

  #163 opened 3 years ago by jcheadle-rti
  4

• Error handling on empty results

  #160 opened 3 years ago by cschreep
  1

• Tranql - Redis connection bug

  #222 opened 3 years ago by oihawkins
  2

• Change sync ARAGORN query to be truly synchronous

  #211 opened 3 years ago by oihawkins
  4

• NGINX server for search data

  #168 opened 3 years ago by cschreep
  1

• add new dug results grouped by top level variables and studies

  #212 opened 3 years ago by oihawkins
  0

• Ingest SPARC data

  #169 opened 3 years ago by cschreep
  5

• Consider using NLTK to get rid of stop words in search inputs

  #174 opened 3 years ago by HowardLander
  2

• Remove incorrect ERROR logs

  #158 opened 3 years ago by cschreep
  2