Pinned Repositories
D3E
Discrete Distributional Differential Expression
SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
SC3-paper-figures
Scripts to recreate figures from the SC3 paper
scfind
scfind-shiny
scmap
A tool for unsupervised projection of single cell RNA-seq data
scmap-shiny
scRNA.seq.course
Analysis of single cell RNA-seq data course
scRNA.seq.datasets
Collection of public scRNA-Seq datasets used by our group
VASAseq_2022
This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
Hemberg Lab's Repositories
hemberg-lab/scRNA.seq.course
Analysis of single cell RNA-seq data course
hemberg-lab/scRNA.seq.datasets
Collection of public scRNA-Seq datasets used by our group
hemberg-lab/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
hemberg-lab/scmap
A tool for unsupervised projection of single cell RNA-seq data
hemberg-lab/scfind
hemberg-lab/SC3-paper-figures
Scripts to recreate figures from the SC3 paper
hemberg-lab/D3E
Discrete Distributional Differential Expression
hemberg-lab/VASAseq_2022
This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
hemberg-lab/MicroExonator
Snakemake pipeline for microexon discovery and quantification
hemberg-lab/sc3s
Single Cell Consensus Clustering with Speed
hemberg-lab/scmap-shiny
hemberg-lab/RNA_seq_snakepipes
hemberg-lab/scfind-paper-figures
Scripts to recreate figures from the scfind paper
hemberg-lab/scfindME
scfindME adaps scfind to alternative splicing analysis
hemberg-lab/scmap-paper-figures
Scripts to recreate figures from the scmap paper
hemberg-lab/scASfind
Identification of cell type-specific alternative splicing events using scASfind
hemberg-lab/FastSC3
A tool for fast unsupervised clustering of very large single cell RNA-Seq data
hemberg-lab/scRNA.seq.funcs
R package containing our own functions used in the scRNA.seq.course
hemberg-lab/scfind-shiny
hemberg-lab/MPRAnator
A webtool to create DNA sequence variants
hemberg-lab/nrg-paper-figures
hemberg-lab/tutorials
hemberg-lab/yeastDrop-Seq
Computational pipeline to reproduce the results in the paper.
hemberg-lab/hemberg-lab.github.io
hemberg-lab/sctransfermap
prediction of cell type from single-cell data
hemberg-lab/Georgakopoulos_Soares_and_Parada_2022
hemberg-lab/SnakePool