Pinned Repositories
DeepAutofocus
Single-shot autofocus on microscopes using deep learning
ExEngine
Execution engine for microscope control
IMSWriter
Java library (+ python wrapper) for writing Imaris IMS files
mmCoreAndDevices
Micro-Manager's device control layer, written in C++
Pygellan
[DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan
VisualInformationTheory
Companion code to paper: "A visual introduction to information theory"
pycro-manager
Python control of micro-manager for customized data acquisition
BSCCM
Berkeley Single Cell Computational Microscopy dataset
DeepAutofocus
Single-shot autofocus on microscopes using deep learning
EncodingInformation
Information-Driven Design of Imaging Systems
henrypinkard's Repositories
henrypinkard/VisualInformationTheory
Companion code to paper: "A visual introduction to information theory"
henrypinkard/ExEngine
Execution engine for microscope control
henrypinkard/DeepAutofocus
Single-shot autofocus on microscopes using deep learning
henrypinkard/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
henrypinkard/NDStorage
N-dimensional, multiresolution file format for Micro-Manager
henrypinkard/pycro-manager
Python control of micro-manager for customized data acquisition
henrypinkard/AcqEngJ
Java-based acquisition engine for Micro-manager
henrypinkard/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
henrypinkard/clean-plots
Nice looking matplotlib plots
henrypinkard/dryad-app
Codebase for the collaboration of Dryad and Dash data publication and curation services.
henrypinkard/EncodingInformation
henrypinkard/exo
Exoskeleton
henrypinkard/henrypinkard.github.io
henrypinkard/latex-goodies
A collection of LaTeX related stuff that I think is worth sharing
henrypinkard/LightSheetManager
henrypinkard/micro-manager
Microscope control and image acquisition integrated with ImageJ
henrypinkard/micro-manager.github.io
Micro-Manager website source
henrypinkard/mmpycorex
Python package for unified MMCore access through pymmcore or ZMQ-MMCoreJ + associated utilities
henrypinkard/NDViewer
N-D multichannel multiresolution image viewer for Micro-Manager
henrypinkard/nerfies.github.io
henrypinkard/notion-sdk-py
The official Notion API client library, but rewritten in Python! (sync + async)
henrypinkard/openmv
OpenMV Camera Module
henrypinkard/probability
Probabilistic reasoning and statistical analysis in TensorFlow
henrypinkard/pycro-plus-bridge
henrypinkard/PyJavaZ
Seamlessly invoke Java methods from Python, whether on the same machine or across a network, with PyJavaZ's high-performance remote procedure call (RPC) protocol
henrypinkard/pymmcore
Python bindings for MMCore, Micro-Manager's device control layer
henrypinkard/python-gsoc.github.io
Website and ideas page for Python's Google Summer of Code efforts
henrypinkard/RemoveGithubNews
Browser extension to remove the GitHub newsfeed
henrypinkard/scikit-image
Image processing in Python
henrypinkard/scvi-tools
Deep generative models for single-cell omics data