micro-manager/pycro-manager

Issues

• Add cleanup() to headless mode docs

  #673 opened a month ago by henrypinkard
  2

• Documentation and tests for new APIs

  #693 opened 2 months ago by henrypinkard
  1

• Seeking feedback on new API for adaptive acquisition

  #654 opened 2 months ago by henrypinkard
  15

• Example for auto focus and control XY-stage with python

  #793 opened 3 months ago by shay82
  0

• Interrupting acquisition while running

  #713 opened 3 months ago by jacopoabramo
  1

• Restart acquisition after abort

  #664 opened 3 months ago by ieivanov
  3

• min_start_time with order='zt' not working as expected

  #733 opened 3 months ago by miromarszal
  1

• pycromanager.Core API parity

  #679 opened 4 months ago by tlambert03
  6

• Issue setting save directory for micro magellan

  #789 opened 4 months ago by jrtage
  1

• Execution Blocked if Socket times out or unavailable. (Core)

  #786 opened 4 months ago by samhitech
  3

• Exception: Socket timed out after 1000 milliseconds

  #781 opened 4 months ago by alex997-phy
  3

• Pycromanager and Micromagellan: ''MagellanAcquisition' object has no attribute '_acq"

  #780 opened 4 months ago by bwee
  6

• Best way to use Stage Position List for multi_d_acquisition_events

  #778 opened 5 months ago by jones-lab-tamu
  1

• Synchronizing Tunable Lens, XY Stage, and Camera in pycromanager's 'Acquire' Functionality

  #722 opened 5 months ago by kidantad
  3

• pycromanager setting the root logger on import

  #766 opened 5 months ago by bruno-digitbio
  8

• µManager NDtiff viewer bug when using pycro-manager

  #767 opened 5 months ago by Oftatkofta
  1

• multicam and pycromanager ndtiff channel dimension read/write mismatch

  #756 opened 5 months ago by edyoshikun
  2

• Problem of exception coming from acquisition with pycromanger

  #765 opened 5 months ago by f5599
  3

• Magellan class does not initialize

  #739 opened 7 months ago by mdanderson03
  10

• Errors on shutdown with multiple headless MM instances.

  #763 opened 7 months ago by carlkesselman
  5

• Potential Issue with Acquisition Notification

  #760 opened 7 months ago by carlkesselman
  3

• `acquire` does not accept generators; RAM dataset not recoverable

  #750 opened 7 months ago by jacopoabramo
  7

• pycromanager on wsl2 with micromanager 2.0 on windows 10

  #738 opened 7 months ago by svikolev
  3

• Multi-D Acquisition window freezes when changing window size

  #723 opened 7 months ago by caichangjia
  8

• Magellan ignores individual exposure times for channels

  #696 opened 7 months ago by manuelmaeritz
  7

• error on running script to verify install

  #737 opened 7 months ago by ThomasDzelzainis
  1

• Core() ImportError: sys.meta_path is None, Python is likely shutting down

  #721 opened 7 months ago by SebastianVivoverse
  7

• core.snap_image() works once and then crashes

  #735 opened 10 months ago by mdanderson03
  2

• Event type depends on time_interval_s

  #734 opened 10 months ago by miromarszal
  1

• numpy arrays endianess is incorrect

  #730 opened a year ago by ilyasdc
  2

• Update dependencies

  #695 opened a year ago by goanpeca
  3

• Adding possibility to redirect debug print to Python logger instance

  #715 opened a year ago by jacopoabramo
  2

• Launching headless mode with no configuration file

  #698 opened a year ago by jacopoabramo
  11

• After first acquired dataset, PycroManager acquisition is stuck (headless mode)

  #717 opened a year ago by jacopoabramo
  2

• Clarification in case of multiple stages of the same class

  #716 opened a year ago by jacopoabramo
  1

• Monitoring number of acquired frames

  #714 opened a year ago by jacopoabramo
  2

• Listing a device properties from the Core instance

  #710 opened a year ago by jacopoabramo
  2

• "No device with label """ when dynamically loading devices via the Core and running Acquisition

  #702 opened a year ago by jacopoabramo
  2

• Images being processed but not saved

  #682 opened a year ago by carlkesselman
  15

• Script hangs in headless mode

  #672 opened a year ago by jacopoabramo
  8

• Save single image snap as NDTiff

  #697 opened a year ago by jacopoabramo
  1

• New live 3D view example needed

  #694 opened a year ago by henrypinkard
  0

• Potential race condition in the Bridge

  #635 opened a year ago by henrypinkard
  1

• Different recording format from NDTIFF

  #671 opened a year ago by jacopoabramo
  5

• UserWarning on acquisition notification handler.

  #678 opened a year ago by carlkesselman
  4

• Automated tests dont use latest source when PR includes changes to PycroManagerJava

  #653 opened a year ago by henrypinkard
  2

• Pycromanager acquisition fails after changing image size

  #639 opened a year ago by ieivanov
  1

• Update requirements

  #662 opened a year ago by goanpeca
  3

• Make some tests to cover multi-z stage acquisition events

  #663 opened a year ago by henrypinkard
  0

• Check for maven dependencies at test time

  #633 opened a year ago by henrypinkard
  0