hfxcarl

hfxcarl's Stars

• Moataz-Elmesmary/Data-Science-Roadmap

  Data Science Roadmap from A to Z

  3.3k5021456

• hiromis/notes

  Language:CSS1k458477

• nroduit/Weasis

  Weasis is a DICOM viewer available as a desktop application or as a web-based application.

  Language:Java82150471292

• nipreps/fmriprep

  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

  Language:HTML636311.8k294

• ReproNim/neurodocker

  Generate custom Docker and Singularity images, and minimize existing containers

  Language:Python3291829597

• netneurolab/neuromaps

  A toolbox for comparing brain maps

  Language:Python24278155

• MIC-DKFZ/TractSeg

  Automatic White Matter Bundle Segmentation

  Language:Python2271427176

• BexTuychiev/tricking-data-science

  A book of subtle code tricks and gem resources for all things data, machine learning and deep learning.

  Language:Jupyter Notebook1656229

• nipreps/smriprep

  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

  Language:Python1331418439

• open-dicom/awesome-dicom

  A curated list of awesome DICOM resources and libraries.

  1267617

• MICA-MNI/BrainStat

  A statistics and context decoding toolbox for neuroimaging.

  Language:Jupyter Notebook9588022

• MICA-MNI/micapipe

  micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

  Language:Shell89410730

• CIC-methods/FID-A

  Toolbox for simulation and processing of in-vivo magnetic resonance spectroscopy (MRS) data

  Language:MATLAB84173973

• PennLINC/xcp_d

  Post-processing of fMRIPrep, NiBabies, and HCP outputs

  Language:Python76949126

• rordenlab/niimath

  niimath - a clone of fslmaths. Try the live demo:

  Language:C5561816

• demidenm/PyReliMRI

  Python-based Reliability in MRI: Calculating Group level and Individual Level Similarity between runs and sessions.

  Language:Python35203

• mvdoc/budapest-fmri-data

  Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.

  Language:Jupyter Notebook27502

• CoBrALab/optimized_antsMultivariateTemplateConstruction

  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

  Language:Shell235698

• Parietal-INRIA/fmralign

  Functional alignment and template estimation library for functional Magnetic Resonance Imaging data

  Language:Python207367

• feilong/tpl-onavg

  onavg is a cortical surface template that was created based on high-quality structural scans of 1,031 brains from OpenNeuro

  11310

• mbedini/The-HCP-MMP1.0-atlas-in-FSL

  A volumetric version of the HCP-MMP1 atlas conveniently imported in FSL. This repo was used in Bedini, M., Olivetti, E., Avesani, P., & Baldauf, D. (2023). Accurate localization and coactivation profiles of the frontal eye field and inferior frontal junction: an ALE and MACM fMRI meta-analysis. Brain Structure and Function, 1-21.

  11103

• neuropycon/neuropycon_demo

  Group analysis demo with NeuroPycon

  Language:Python9717

• neurolabusc/PyDog

  Python Difference of Gaussian (DoG) edge finding demonstration MRI data

  Language:Python6303

• garikoitz/RTP-pipeline

  Docker based Gear that runs the Reproducible Tract Profiles (RTP) pipeline

  Language:MATLAB33

• courtois-neuromod/ds_prep

  All the scripts to prepare the Courtois-Neuromod dataset

  Language:Python2694

• marcelzwiers/mriqc_sub

  mriqc_sub.py is a wrapper around mriqc that queries the bids directory for new participants and then runs participant-level mriqc jobs on the compute cluster. If the participant-level jobs have all finished, you can run the group-level "mriqc bidsdir outputdir group" command to generate group level results (the group level report and the features CSV table)

  Language:Python2202

• cmpetty/mypytools

  place to hold some of my python tools

  Language:Python10

• joshuapearson2/Lesion-Segmentation

  Lesion segmentation using deepmedic for the tractography pipeline.

  Language:Jupyter Notebook10

• miykael/workshop_ino_03

  Innovation workshop

  Language:Jupyter Notebook110

• PeerHerholz/responsible_AI_resources

  A small repository to host an interactive dashboard focused on "Responsible AI" literature.

  Language:Python10