Pinned Repositories
neuro-functional-pipeline
fMRIPrep containerized pipeline
neuro-raw-pipeline
Raw data ingestion and organization
neuro-structural-pipeline
HCP style structural MRI processing pipeline
open-data
Scripts and documentation for dealing with open datasets
3T_MRI_harmonisation
Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".
abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
AFQ-Insight
Statistical learning for AFQ results
freesurfer
Neuroimaging analysis and visualization suite
qsiprep
Preprocessing of diffusion MRI
osprey
All-in-one toolbox for processing of magnetic resonance spectroscopy data.
hfxcarl's Repositories
hfxcarl/3T_MRI_harmonisation
Code and data associated with the manuscript "A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches".
hfxcarl/abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
hfxcarl/AFQ-Insight
Statistical learning for AFQ results
hfxcarl/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
hfxcarl/al-folio
A beautiful, simple, clean, and responsive Jekyll theme for academics
hfxcarl/Anima-Public
Open source software for medical image processing from the Empenn team
hfxcarl/ANTs_Defacer
hfxcarl/apaper_highlight_narps
Scripts related to the paper
hfxcarl/bmovie-release-NWB-BIDS
Code for data analysis and visualization for the data descriptor "Multimodal brain responses during movie watching"
hfxcarl/FID-A
Toolbox for simulation and processing of in-vivo magnetic resonance spectroscopy (MRS) data
hfxcarl/fsl_mrs
Mirror of the FSL-MRS gitlab repository
hfxcarl/giga_preprocess2
Preprocess datasets using fMRIPrep
hfxcarl/hcgalvan_project
This project is about creating an AI model to predict a medical diagnosis
hfxcarl/hfxcarl-book
hfxcarl/hfxcarl-neuroimaging.github.io
hfxcarl/IDConn
Pipeline for studying individual differences in network topography in task-based or resting state fMRI data
hfxcarl/ipyniivue
Python and Jupyter integration of NiiVue using webgl 2.0
hfxcarl/NeuralDataHackathon2024
Code and data for Neural Data Hackathon 2024 in Halifax
hfxcarl/ni_tools
Tools for NeuroImaging Data Analysis
hfxcarl/niimath
niimath - a clone of fslmaths. Try the live demo:
hfxcarl/nobrainer
A framework for developing neural network models for 3D image processing.
hfxcarl/optimized_antsMultivariateTemplateConstruction
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
hfxcarl/osprey
All-in-one toolbox for processing of magnetic resonance spectroscopy data.
hfxcarl/perrin_project
hfxcarl/QLS-course-materials
Materials for the 2022 NeuroDataScience Course (McGill QLSC612)
hfxcarl/rs_signal_extract
BIDS App for resting state signal extraction using nilearn.
hfxcarl/SDC-BIDS-sMRI
Structural Neuroimaging Analysis in Python
hfxcarl/spec2nii
Multi-format in vivo MR spectroscopy conversion to NIFTI
hfxcarl/suspect
MRS processing tools
hfxcarl/xnat-dicomqc
XNAT container script to do simple configurable tag-based QC on scan DICOMs