/BenchmarkMicrobiome

Large-scale Benchmarking of Microbial Multivariable Association Methods

Primary LanguageRMIT LicenseMIT

Large-scale Benchmarking of Microbiome Differential Abundance Analysis Methods

Overview

This repository is an upgraded version of https://github.com/biobakery/maaslin2_benchmark, used in the MaAsLin 2 manuscript. The tutorial is still under development and currently we are working on consolidating the scripts of this repository into an R package for easy use. Check back soon for more updates!

References

Ma et al. (2020+). A Statistical Model for Describing and Simulating Microbial Community Profiles (In Submission).

Citation

Mallick, H. et al. (2020+). Multivariable Association Discovery in Population-scale Meta-omics Studies (In Submission).