differential-abundance-analysis
There are 13 repositories under differential-abundance-analysis topic.
yiluheihei/microbiomeMarker
R package for microbiome biomarker discovery
biobakery/Maaslin2
MaAsLin2: Microbiome Multivariate Association with Linear Models
FrederickHuangLin/ANCOMBC
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
FrederickHuangLin/ANCOM-BC-Code-Archive
Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
himelmallick/Tweedieverse
Differential analysis of multi-omics data based on the Tweedie distribution
mikemc/differential-abundance-theory
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
FrederickHuangLin/Microbiome-Review-Code-Archive
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
himelmallick/BenchmarkMicrobiome
Large-scale Benchmarking of Microbial Multivariable Association Methods
shuangj00/BMDA
A Bayesian model for the differential abundance analysis of microbiome sequencing data
himelmallick/TweedieLabs
Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.
iliapopov17/The-shadow-of-HIV
Repository for course project in Bioinformatics Institute 2023-2024
biobakery/maaslin2_benchmark
Large-scale Benchmarking of Microbial Multivariable Association Methods
MicrobialGenomics-IrsicaixaOrg/dar
dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.