hisplan
Assistant Professor / School of Applied Artificial Intelligence @ Handong, Computational Biologist @ Single Cell Research Initiative / Dana Pe'er Lab
Memorial Sloan Kettering Cancer CenterNew York, NY
Pinned Repositories
seqc
Single-Cell Sequencing Quality Control and Processing Software
cellranger-custom-ref-pkg
Building custom reference package for Cell Ranger ATAC and ARC
docker-cellranger
Dockerized Cell Ranger
docker-velocyto
Dockerized Velocyto for RNA Velocity
folder-maze
Folder Maze - Find treasure.txt
scing
SCING: Single-Cell pIpeliNe Garden (pronounced as "sing" /siŋ/)
sharp
A single-cell demultiplexing pipeline, the sharp (♯)
roslin-variant
Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis
hisplan's Repositories
hisplan/docker-cellranger
Dockerized Cell Ranger
hisplan/scing
SCING: Single-Cell pIpeliNe Garden (pronounced as "sing" /siŋ/)
hisplan/sharp
A single-cell demultiplexing pipeline, the sharp (♯)
hisplan/msk-hpc-utils
Utilities for MSK HPC
hisplan/bcd-test
Code Management using Git and GitHub
hisplan/bcd-sandbox
빅데이터종합설계 샌드박스
hisplan/bigmac-kiosk-demo
Big Mac Kiosk Demo
hisplan/cromsfer
Cromwell Output Transfer
hisplan/cromwell-gwf-log
hisplan/cromwell-gwf-setup
Setting up Cromwell + AWS GWF (Genomics Workflows)
hisplan/docker-bcftools
Dockerized bcftools
hisplan/docker-cellranger-atac
Dockerized Cell Ranger ATAC
hisplan/docker-hello-handong
Hello Handong using Docker
hisplan/docker-htslib
Dockerized HTSlib (bgzip, htsfile, and tabix utilities)
hisplan/docker-samtools
Dockerized samtools
hisplan/facamp-2024-summer
Football Analytics Camp Summer 2024
hisplan/handong-bio-ai-workshop-2023-01
Handong Bio-AI Workshop Winter 2023
hisplan/hello-world
hisplan/hisplan.github.io
Personal Website
hisplan/scing-notebooks
A collection of Jupyter notebooks which automate the creation of input files for SCING pipelines
hisplan/seqc
Single-Cell Sequencing Quality Control and Processing Software
hisplan/seqc-ada
SEQC Ada (AutomateD Analysis)
hisplan/seqc-docker
Dockerized SEQC
hisplan/seqc-packer
This package automates the creation of SEQC AMI (Amazon Machine Image).
hisplan/tuning_playbook
A playbook for systematically maximizing the performance of deep learning models.
hisplan/tutorial-conda
hisplan/wdl-ArchR
WDLized ArchR
hisplan/wdl-cellranger-atac
WDLized Cell Ranger ATAC
hisplan/wdl-cellranger-vdj
WDLized Cell Ranger V(D)J
hisplan/wdl-mkref
WDLized mkref