Pinned Repositories
Analysis_Miniscope
behavior
boxplotter
CalBlitz
Blazing fast calcium imaging analysis toolbox
ClearMap
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
code
pyPhotometry code, GUI and micropython firmware
cv
My automatically-generated academic CV
cv2
flir-thermal
Python wrappers to read seq files from flir thermal cameras. These functions require FLIR sciene file SDK.
ViRMEn
This is a fork of ViRMEn by Dmitriy Aronov from David Tank lab at Princeton. This repo is only for Andermann lab implementation of ViRMEn. For the original code and documentation visit https://pni.princeton.edu/pni-software-tools/virmen
hkucukdereli's Repositories
hkucukdereli/flir-thermal
Python wrappers to read seq files from flir thermal cameras. These functions require FLIR sciene file SDK.
hkucukdereli/ViRMEn
This is a fork of ViRMEn by Dmitriy Aronov from David Tank lab at Princeton. This repo is only for Andermann lab implementation of ViRMEn. For the original code and documentation visit https://pni.princeton.edu/pni-software-tools/virmen
hkucukdereli/Analysis_Miniscope
hkucukdereli/behavior
hkucukdereli/boxplotter
hkucukdereli/CalBlitz
Blazing fast calcium imaging analysis toolbox
hkucukdereli/ClearMap
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
hkucukdereli/code
pyPhotometry code, GUI and micropython firmware
hkucukdereli/cv
My automatically-generated academic CV
hkucukdereli/cv2
hkucukdereli/DeepLabCut
Markerless tracking of user-defined features with deep learning
hkucukdereli/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
hkucukdereli/designs_to_cut
designs for laser cuts
hkucukdereli/digitalWriteFast
Arduino library for faster digitalWrite using port manipulation and macro for ease in pin assignments.
hkucukdereli/eegcellent
hkucukdereli/hardware
pyPhotometry hardware
hkucukdereli/Kucukdereli_etal_2024
hkucukdereli/labsync
Synchronizing data between servers
hkucukdereli/lickOmeter
hkucukdereli/M-Track
M-Track: A new software for automated detection of forepaw trajectories in mice
hkucukdereli/matplotlib
matplotlib: plotting with Python
hkucukdereli/Miniscope_DAQ_PCB
Design, fabrication, and assembly files for the Miniscope DAQ PCB
hkucukdereli/MousyBox
hkucukdereli/nest-simulator
The NEST simulator
hkucukdereli/pipe
Twophoton pipeline
hkucukdereli/running_encoder
hkucukdereli/virtually
Code to analyze VR RTPP behavior. This code has been kicking around for some time now. Written and optimized for a very specific purpose in mind. Use it at your own peril.
hkucukdereli/vrboxdesigns